Evidence map›Paper›PMID 39677790›Full record

ArticlebioRxiv : the preprint server for biology2024

CGC1, a new reference genome for

Kazuki Ichikawa, Massa J Shoura, Karen L Artiles, Dae-Eun Jeong, Chie Owa, Haruka Kobayashi, Yoshihiko Suzuki, Manami Kanamori, Yu Toyoshima, Yuichi Iino and 5 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Kazuki IchikawaDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8583, Japan.ORCID 0009-0003-7884-5126
Massa J ShouraDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-3278-296X
Karen L ArtilesDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-1674-064X
Dae-Eun JeongDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-9229-4717
Chie OwaDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8583, Japan.ORCID 0000-0002-5241-5414
Haruka KobayashiDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8583, Japan.
Yoshihiko SuzukiDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8583, Japan.ORCID 0000-0002-8807-2206
Manami KanamoriDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.
Yu ToyoshimaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.ORCID 0000-0001-5239-2235
Yuichi IinoDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan.ORCID 0000-0002-0936-2660
Ann E RougvieDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55454, USA.ORCID 0000-0002-8743-6143
Lamia WahbaLaboratory of Non-Canonical Modes of Inheritance, Rockefeller University, New York, NY 10065, USA.ORCID 0000-0001-8369-6864
Andrew Z FireDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0001-6217-8312
Erich M SchwarzDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0003-3151-4381
Shinichi MorishitaDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba 277-8583, Japan.ORCID 0000-0002-6201-8885

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Cellular Response to Genetic ChangeR35GM130366 · NIGMS · STANFORD UNIVERSITY · PI ANDREW Z. FIRE · 2019 to 2026
$4.8M
NIGMS NIH HHS R35 GM130366NIH HHS P40 OD010440
6 · The paper itself

Abstract

The original 100.3 Mb reference genome for

Identifiers

PMID39677790
PMCPMC11643116

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.