Evidence map›Paper›PMID 39677766›Full record

ArticlebioRxiv : the preprint server for biology2025

High-throughput prediction of peptide structural conformations with AlphaFold2.

Alexander M Ille, Christopher Markosian, Stephen K Burley, Paul C Whitford, José N Onuchic, Renata Pasqualini, Wadih Arap

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alexander M IlleRutgers Cancer Institute, Newark, NJ, USA.
Christopher MarkosianRutgers Cancer Institute, Newark, NJ, USA.
Stephen K BurleyResearch Collaboratory for Structural Bioinformatics Protein Data Bank, Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.
Paul C WhitfordCenter for Theoretical Biological Physics, Northeastern University, Boston, MA, USA.
José N OnuchicCenter for Theoretical Biological Physics, Rice University, Houston, TX, USA.
Renata PasqualiniRutgers Cancer Institute, Newark, NJ, USA.
Wadih ArapRutgers Cancer Institute, Newark, NJ, USA.

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
PDB Management by the Research Collaboratory for Structural BioinformaticsR01GM157729 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI STEPHEN K BURLEY · 2024 to 2026
$11.6M
ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
Elucidating the mechanisms that enable translation in bacterial and eukaryotic ribosomesR35GM153502 · NIGMS · NORTHEASTERN UNIVERSITY · PI Paul Charles Whitford · 2024 to 2026
$1.3M
NCI NIH HHS P30 CA072720NIGMS NIH HHS R01 GM129325NIGMS NIH HHS R01 GM157729NIGMS NIH HHS R35 GM153502
6 · The paper itself

Abstract

Protein structure prediction

Identifiers

PMID39677766
PMCPMC11642853

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.