Evidence map›Paper›PMID 39676325›Full record

ArticleClinical and molecular hepatology2025

Plasma lipidomics and fungal peptide-based community analysis identifies distinct signatures for early mortality in acute liver failure.

Neha Sharma, Sushmita Pandey, Gaurav Tripathi, Manisha Yadav, Nupur Sharma, Babu Mathew, Abhishak Gupta, Vasundhra Bindal, Sadam H Bhat, Yash Magar and 7 more

Abstract read
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Article in Clinical and molecular hepatology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

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0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Lipidomic profiles associated with treatment related hepatotoxicity in children with acute lymphoblastic leukemia.Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer · 2026
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Neha SharmaDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Sushmita PandeyDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Gaurav TripathiDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Manisha YadavDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Nupur SharmaDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Babu MathewDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Abhishak GuptaArtemis Hospital Gurgaon, Gurgaon, India.
Vasundhra BindalDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Sadam H BhatDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Yash MagarAmity Stem Cell Institute, Amity Medical School, Amity University, Haryana, India.
Rimsha SaifDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Sanju YadavDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Amritpal KaurDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Rakhi MaiwallDepartment of Hepatology, Institute of Liver and Biliary Sciences, New Delhi, India.
Shvetank SharmaDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.
Shiv Kumar SarinDepartment of Hepatology, Institute of Liver and Biliary Sciences, New Delhi, India.
Jaswinder Singh MarasDepartments of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, India.

Funding

Indian Council of Medical Research 2020-4958Indian Council of Medical Research 5/4/8-3/CD/JS/2021-NCD-II
6 · The paper itself

Abstract

BACKGROUND/

aimsAcute liver failure (ALF) has high mortality predominantly due to compromised immune system and increased vulnerability to bacterial and fungal infections.

methodsPlasma lipidome and fungal peptide-based community (mycobiome) analysis were performed in discovery cohort (ALF=40, healthy=5) and validated in a validation cohort of 230 patients with ALF using high-resolution-mass-spectrometry, artificial neural network (ANN) and machine learning (ML).

resultsUntargeted lipidomics identified 2,013 lipids across 8 lipid group. 5 lipid-species-phosphatidylcholine (PC)[15:0/17:0], PC[20:1/14:1], PC[26:4/10:0], PC[32:0] and TG[4:0/10:0/23:6]-significantly differentiated ALF-NS (FC>10, P<0.05, FDR<0.01). Mycobiome alpha/beta diversity was significantly higher and showed 4 phyla and >20 species significantly dysregulated in ALF-NS linked with lipid metabolism, fatty acid elongation in ER, and others (P<0.05). Lipid and mycobiome diversity values in ALF-NS were strongly correlated (r2>0.7, P<0.05). Multi-modular correlation network showed striking associations between lipid, fungal peptide modules, and clinical parameters specific to ALF-NS (P<0.05). Cryptococcus amylolentus CBS6039 and Penicillium oxalicum 1142 directly correlated with phosphatidylcholine, triglycerides, and severity in ALF-NS (r2>0.85, P<0.05). POD-fungus and POD-lipids showed direct association with infection, necrosis, and hepatic encephalopathy (Beta>1.2, P<0.05). POD-lipid (AUC=0.969 and HR=1.99 [1.02-2.04]) superseded POD-fungus and severity indices for early-mortality prediction. Finally, significant increase in PC (15:0/17:0) level showed highest normalized importance, and ANNs and ML predicted early mortality with >95% accuracy, sensitivity, and specificity. Interestingly, fungal surveillance protein Clec7a was significantly downregulated (>2-fold), leading to a notable increase in fungal infection-mediated choline/phosphatidylcholine and associated enzymes (FC>1.5; Kennedy cycle). This contributed to phosphatidic acid-mediated hyper-inflammation in ALF-NS.

conclusionIn ALF, the plasma lipidome and mycobiome are dysregulated. Increased circulating phosphatidylcholine could stratify ALF predisposed to early mortality or require emergency liver transplantation.

Indexed as

LipidomicsLipidsLiver Failure, AcutePeptidesAdultFemaleFungiHumansMachine LearningMaleMiddle AgedMycobiomeNeural Networks, ComputerPhosphatidylcholinesLipidsPeptidesPhosphatidylcholinesDILIFungal infectionsLipidomeLiver failureOmicsPhosphatidylcholine

Identifiers

PMID39676325
PMCPMC12538150

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.