Evidence map›Paper›PMID 39675709›Full record

ArticleThe Journal of biological chemistry2025

Mammalian hydroxylation of microbiome-derived obesogen, delta-valerobetaine, to homocarnitine, a 5-carbon carnitine analog.

Jaclyn Weinberg, Ken H Liu, Choon-Myung Lee, William J Crandall, André R Cuevas, Samuel A Druzak, Edward T Morgan, Zachery R Jarrell, Eric A Ortlund, Greg S Martin and 4 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jaclyn WeinbergDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Ken H LiuDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Choon-Myung LeeDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
William J CrandallDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
André R CuevasDepartment of Biochemistry, Department of Medicine, Emory University, Atlanta, Georgia, USA.
Samuel A DruzakDepartment of Biochemistry, Department of Medicine, Emory University, Atlanta, Georgia, USA.
Edward T MorganDepartment of Pharmacology and Chemical Biology, Emory University, Atlanta, Georgia, USA.
Zachery R JarrellDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Eric A OrtlundDepartment of Biochemistry, Department of Medicine, Emory University, Atlanta, Georgia, USA.
Greg S MartinDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Grant SingerDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Frederick H StrobelDepartment of Chemistry, Emory University, Atlanta, Georgia, USA.
Young-Mi GoDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.
Dean P JonesDivision of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, USA. Electronic address: dpjones@emory.edu.

Funding

Implementing a Maternal health and PRegnancy Outcomes Vision for Everyone (IMPROVE)UL1TR002378 · NCATS · EMORY UNIVERSITY · PI Andres J Garcia, Elizabeth O. Ofili · 2017 to 2026
$92.1M
Them1-Mediated Metabolic Regulation and Pathogenic Role in NAFLDR01DK103046 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI DAVID E. COHEN, Susan J Hagen · 2015 to 2026
$7.6M
Graduate Training in the Pharmacological StudiesT32GM008602 · NIGMS · EMORY UNIVERSITY · PI HALL, RANDY A. · 1996 to 2021
$5.1M
SPPACE INSTI Study: Sex-specific Predictors, Pathways, And Cardiometabolic Effects of Weight Gain Associated with Integrase Strand-Transfer InhibitorsR01DK125246 · NIDDK · EMORY UNIVERSITY · PI ALVAREZ, JESSICA ALEJANDRA, LAHIRI, CECILE DELILLE · 2021 to 2025
$4.2M
U2C Experimental CoreU2CES030163 · NIEHS · EMORY UNIVERSITY · PI JONES, DEAN PAUL, LI, SHUZHAO · 2018 to 2021
$3.6M
Cadmium-potentiated metabolic reprogramming in pathogenesis of lung fibrosisR01ES031980 · NIEHS · EMORY UNIVERSITY · PI GO KANG, YOUNG-MI · 2021 to 2025
$2.2M
Microbiome Metabolite Valerobetaine: Mechanisms in AgingR21AG080247 · NIA · EMORY UNIVERSITY · PI GO KANG, YOUNG-MI, JONES, DEAN PAUL · 2023 to 2023
$430k
Targeting the orphan nuclear receptor LRH-1 with small moleculesR56DK115213 · NIDDK · EMORY UNIVERSITY · PI CALVERT, JOHN WINTER, ORTLUND, ERIC A · 2022 to 2022
$154k
Contributions of host and gut microbial mediated metabolism to the antiviral activity of elderberryF31AT012140 · NCCIH · EMORY UNIVERSITY · PI CRANDALL, WILLIAM JOSEPH · 2022 to 2024
$143k
Phosphatidylcholine transfer protein interacts with PPARd to modulate activityF31DK126435 · NIDDK · EMORY UNIVERSITY · PI DRUZAK, SAMUEL ADAM · 2020 to 2021
$92k
NCATS NIH HHS UL1 TR002378NCCIH NIH HHS F31 AT012140NIA NIH HHS R21 AG080247NIDDK NIH HHS F31 DK126435NIDDK NIH HHS R01 DK103046NIDDK NIH HHS R01 DK125246NIDDK NIH HHS R56 DK115213NIEHS NIH HHS R01 ES031980NIEHS NIH HHS U2C ES030163NIGMS NIH HHS T32 GM008602
6 · The paper itself

Abstract

The recently discovered microbiome-generated obesogen, δ-valerobetaine (5-(trimethylammonio)pentanoate), is a 5-carbon structural analog of the carnitine precursor, γ-butyrobetaine. Here, we report that δ-valerobetaine is enzymatically hydroxylated by mammalian γ-butyrobetaine dioxygenase (BBOX) to form 3-hydroxy-5-(trimethylammonio)pentanoate, a 5-carbon analog of carnitine, which we term homocarnitine. Homocarnitine production by human liver extracts depends upon the required BBOX cofactors, 2-oxoglutarate, Fe

Indexed as

BetaineCarnitinegamma-Butyrobetaine DioxygenaseMicrobiotaAnimalsHumansHydroxylationLiverMaleMiceMice, Inbred C57BLMolecular Dynamics SimulationObesityBetaineCarnitinegamma-Butyrobetaine DioxygenaseacyltransferaseBBOXcarnitineenergy metabolismfatty acid metabolismhomocarnitinemicrobiomeobesityδ-valerobetaine

Identifiers

PMID39675709
PMCPMC11773067

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.