Evidence map›Paper›PMID 39673647›Full record

ArticleJournal of clinical immunology2024

A Novel AGR2 Variant Causing Aberrant Monomer-Dimer Equilibrium Leading to Severe Respiratory and Digestive Symptoms.

Sanami Takada, Silvanna Gallo, Sebastian Silva, Hiroki Tanaka, Oscar Pincheira, Juan Zúñiga, Marcela Villarroel, Ximena Hidalgo, Joel Melo-Tanner, Hidefumi Suzuki and 3 more

Abstract readCase Reports
In one paragraph

Article in Journal of clinical immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sanami TakadaDepartment of Human Genetics, Research Institute, National Center for Global Health and Medicine, Tokyo, 162-8655, Japan.
Silvanna GalloDepartment of Pediatrics, Immunology and Rheumatology Section, Hospital de Puerto Montt, Puerto Montt, Chile.
Sebastian SilvaEscuela de Medicina, Universidad San Sebastián, Sede Patagonia, Puerto Montt, Chile.
Hiroki TanakaDepartment of Structural Virology, Research Institute, National Center for Global Health and Medicine, Tokyo, Japan.
Oscar PincheiraPathological Anatomy Service, Hospital de Puerto Montt, Puerto Montt, Chile.
Juan ZúñigaEscuela de Medicina, Universidad San Sebastián, Sede Patagonia, Puerto Montt, Chile.
Marcela VillarroelDepartment of Pediatrics, Respiratory Diseases Section, Hospital de Puerto Montt, Puerto Montt, Chile.
Ximena HidalgoDepartment of Pediatrics, Gastroenterology Section, Hospital de Puerto Montt, Puerto Montt, Chile.
Joel Melo-TannerInstituto Nacional del Tórax, Santiago, Chile.
Hidefumi SuzukiDepartment of Molecular Biology, Yokohama City University Graduate School of Medical Science, Yokohama, Kanagawa, Japan.
Shinichi MachidaDepartment of Structural Virology, Research Institute, National Center for Global Health and Medicine, Tokyo, Japan.
Hidehisa TakahashiDepartment of Molecular Biology, Yokohama City University Graduate School of Medical Science, Yokohama, Kanagawa, Japan.
Noriko MiyakeDepartment of Human Genetics, Research Institute, National Center for Global Health and Medicine, Tokyo, 162-8655, Japan. nomiyake@ri.ncgm.go.jp.

Funding

Japan Society for the Promotion of Science 22H03047, 22K20905the NCGM Intramural Research Fund 21A1011, 23A2003, 22T003, 23A1017
6 · The paper itself

Abstract

Anterior gradient 2 (AGR2) is a protein disulfide isomerase that is important for protein processing in the endoplasmic reticulum and is essential for mucin production in the digestive and respiratory tracts. Bi-allelic AGR2 variants were recently found to cause recurrent respiratory infections and failure to thrive with or without diarrhea (RIFTD; MIM # 620233), although the mechanisms behind this condition remain unclear. To date, at least 15 patients with homozygous AGR2 variants have been reported. Here, we report two affected siblings in a consanguineous family who had recurrent respiratory infections and digestive symptoms, one of whom needed lung transplantation. To identify the genetic cause of their symptoms, we performed exome sequencing and identified a novel homozygous missense variant in AGR2 (NM_006408.4, c.250A>C, p.(Ser84Arg)) in both affected siblings. Both parents had the identical variant in a heterozygous state. This variant is quite rare in the general population and is clinically compatible with RIFTD, substituting a highly conserved CXXS motif with CXXR. We performed structural modeling and functional studies to investigate the effect of this variant. Through transient overexpression, Ser84Arg AGR2 decreased protein stability, and promoted aberrant dimerization under non-reducing conditions. AGR2 functions in a monomer-dimer equilibrium. Size-exclusion chromatography showed that the Ser84Arg mutant had a larger molecular size than the wild-type protein under non-reducing, but not reducing conditions, indicating that Ser84Arg enhanced intermolecular disulfide bonds. In conclusion, we identified a novel pathogenic AGR2 variant and indicated its abnormal monomer-dimer equilibrium as a possible mechanism involved in the pathogenesis of RIFTD.

Indexed as

MucoproteinsOncogene ProteinsPedigreeChild, PreschoolConsanguinityDiarrheaExome SequencingFemaleHomozygoteHumansInfantMaleModels, MolecularMutation, MissenseProtein MultimerizationProteinsAGR2 protein, humanMucoproteinsOncogene ProteinsProteinsAGR2DimerDisulfide bondsExomeLung transplantationMucinProtein instability

Identifiers

PMID39673647
PMCPMC11646215

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.