Evidence map›Paper›PMID 39673467›Full record

ArticleProtein science : a publication of the Protein Society2025

How sensitive are protein hydration shells to electrolyte concentration and protein composition?

H Geraili Daronkola, Bashar Moussa, Óscar Millet, Oktavian Krenczyk, Gabriel Ortega-Quintanilla, Poul B Petersen, Ana Vila Verde

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

H Geraili DaronkolaFaculty of Physics, University of Duisburg-Essen, Duisburg, Germany.ORCID 0000-0002-8390-7024
Bashar MoussaFaculty of Chemistry and Biochemistry, Ruhr-University Bochum, Bochum, Germany.ORCID 0009-0000-2117-477X
Óscar MilletCIC bioGUNE, Asociación Centro de Investigación Cooperativa en Biociencias, Derio, Bizkaia, Spain.ORCID 0000-0001-8748-4105
Oktavian KrenczykFaculty of Chemistry and Biochemistry, Ruhr-University Bochum, Bochum, Germany.
Gabriel Ortega-QuintanillaCIC bioGUNE, Asociación Centro de Investigación Cooperativa en Biociencias, Derio, Bizkaia, Spain.ORCID 0000-0002-7126-9096
Poul B PetersenFaculty of Chemistry and Biochemistry, Ruhr-University Bochum, Bochum, Germany.
Ana Vila VerdeFaculty of Physics, University of Duisburg-Essen, Duisburg, Germany.ORCID 0000-0003-0337-3972

Funding

Deutsche Forschungsgemeinschaft
6 · The paper itself

Abstract

Proteins of obligate halophilic organisms have an unusually high number of acidic amino acids, thought to enable them to function in multimolar KCl environments. Clarifying the molecular scale mechanisms by which this occurs is relevant for biotechnology, to enable enzymatic synthesis of economically important small molecules in salty environments and other environments with low water activity. Previous studies have suggested that acidic amino acids are necessary at high salt concentration to keep the proteins hydrated by competing with the ions in solution for available water (the "solvent-only" model). We use a combination of solvation shell spectroscopy and molecular dynamics simulations for in total 13 proteins, at high and low KCl concentration, to investigate this scenario. We show that the solvation shells of halophilic and mesophilic proteins of widely different amino acid compositions, net charges, sizes, and structure respond similarly, in terms of composition and of hydrogen bond network, to changes in KCl concentration. The results do not support the solvent-only model, and point to other mechanisms behind the acidity of halophilic proteins. Excess acidic amino acids may ensure protein solubility by the combined effects of having particularly favorable electrostatic interactions with the solvent, ensuring very short range protein-protein repulsion, and having smaller hydrophobic solvent accessible surface area than other charged amino acids. Also possible is that highly acidic proteins are well-tolerated-but not necessarily indispensable-in terms of stability and solubility.

Indexed as

Molecular Dynamics SimulationPotassium ChlorideProteinsWaterElectrolytesHydrogen BondingSolubilityElectrolytesPotassium ChlorideProteinsWater

Identifiers

PMID39673467
PMCPMC11645670

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.