Evidence map›Paper›PMID 39672917›Full record

ReviewNature protocols2025

Versatile MRI acquisition and processing protocol for population-based neuroimaging.

Alexandra Koch, Rüdiger Stirnberg, Santiago Estrada, Weiyi Zeng, Valerie Lohner, Mohammad Shahid, Philipp Ehses, Eberhard D Pracht, Martin Reuter, Tony Stöcker and 1 more

Abstract readReview
PubMed Publisher
In one paragraph

Review in Nature protocols, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  5. Regression Is All You Need for Medical Image Translation.IEEE transactions on medical imaging · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alexandra KochPopulation Health Sciences, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.ORCID 0000-0002-9795-0541
Rüdiger StirnbergMR Physics, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.ORCID 0000-0001-7021-1063
Santiago EstradaPopulation Health Sciences, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.ORCID 0000-0003-0339-8870
Weiyi ZengPopulation Health Sciences, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.
Valerie LohnerPopulation Health Sciences, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.ORCID 0000-0001-5589-9701
Mohammad ShahidPopulation Health Sciences, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.
Philipp EhsesMR Physics, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.ORCID 0000-0002-5839-6525
Eberhard D PrachtMR Physics, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.ORCID 0009-0008-4883-9709
Martin ReuterAI in Medical Imaging, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany. Martin.Reuter@dzne.de.ORCID 0000-0002-2665-9693
Tony StöckerMR Physics, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany. Tony.Stoecker@dzne.de.ORCID 0000-0002-8946-9141
Monique M B BretelerPopulation Health Sciences, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany. Monique.Breteler@dzne.de.ORCID 0000-0002-0626-9305

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01GQ1801Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 031L0206
6 · The paper itself

Abstract

Neuroimaging has an essential role in studies of brain health and of cerebrovascular and neurodegenerative diseases, requiring the availability of versatile magnetic resonance imaging (MRI) acquisition and processing protocols. We designed and developed a multipurpose high-resolution MRI protocol for large-scale and long-term population neuroimaging studies that includes structural, diffusion-weighted and functional MRI modalities. This modular protocol takes almost 1 h of scan time and is, apart from a concluding abdominal scan, entirely dedicated to the brain. The protocol links the acquisition of an extensive set of MRI contrasts directly to the corresponding fully automated data processing pipelines and to the required quality assurance of the MRI data and of the image-derived phenotypes. Since its successful implementation in the population-based Rhineland Study (ongoing, currently more than 11,000 participants, target participant number of 20,000), the proposed MRI protocol has proved suitable for epidemiological and clinical cross-sectional and longitudinal studies, including multisite studies. The approach requires expertise in magnetic resonance image acquisition, in computer science for the data management and the execution of processing pipelines, and in brain anatomy for the quality assessment of the MRI data. The protocol takes ~1 h of MRI acquisition and ~20 h of data processing to complete for a single dataset, but parallelization over multiple datasets using high-performance computing resources reduces the processing time. By making the protocol, MRI sequences and pipelines available, we aim to contribute to better comparability, interoperability and reusability of large-scale neuroimaging data.

Indexed as

BrainImage Processing, Computer-AssistedMagnetic Resonance ImagingNeuroimagingHumans

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.