Evidence map›Paper›PMID 39671282›Full record

ArticleSTAR protocols2024

Protocol for single-molecule FISH in the developing mouse retinal vasculature.

Josy Augustine, Madeleine R Smith, Ryan Delaney, Precious O Owuamalam, Guilherme Costa

Abstract read
In one paragraph

Article in STAR protocols, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Josy AugustineWellcome-Wolfson Institute for Experimental Medicine, Queen's University, Belfast BT9 7BL, UK. Electronic address: j.augustine@qub.ac.uk.
Madeleine R SmithWellcome-Wolfson Institute for Experimental Medicine, Queen's University, Belfast BT9 7BL, UK.
Ryan DelaneyAdvanced Imaging and Histology Unit, Faculty of Medicine, Health and Life Sciences, Queen's University, Belfast BT9 7BL, UK.
Precious O OwuamalamWellcome-Wolfson Institute for Experimental Medicine, Queen's University, Belfast BT9 7BL, UK.
Guilherme CostaWellcome-Wolfson Institute for Experimental Medicine, Queen's University, Belfast BT9 7BL, UK. Electronic address: g.costa@qub.ac.uk.

Funding

Medical Research Council
6 · The paper itself

Abstract

The developing vasculature of the post-natal mouse retina is a powerful model to discover mechanisms of vessel formation and to test modulators of neovascularization. We present a protocol for single-molecule fluorescent in situ hybridization (smFISH) in whole-mount mouse retinas enabling the detection of individual mRNAs in vascular endothelial cells. We describe procedures from initial retina preparation to smFISH and detection. Our approach offers simple steps to overcome challenges related to tissue permeabilization, mRNA and protein co-detection, and post-acquisition image processing.

Indexed as

In Situ Hybridization, FluorescenceRetinal VesselsAnimalsEndothelial CellsMiceRetinaRNA, MessengerSingle Molecule ImagingRNA, Messengerdevelopmental biologygene expressionin situ hybridization

Identifiers

PMID39671282
PMCPMC11699415

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.