Evidence map›Paper›PMID 39671177›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Long-range

Tuo Shi, Yeeun Kim, Juan Llamas, Xizi Wang, Peter Fabian, Thomas P Lozito, Neil Segil, Ksenia Gnedeva, J Gage Crump

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Signal control during tissue regeneration in adult animals.Nature reviews. Molecular cell biology · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. PeerJ · 2025
    Article
  8. Long-rangeProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tuo ShiDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.ORCID 0000-0002-5268-0146
Yeeun KimDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.
Juan LlamasDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.
Xizi WangDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.ORCID 0000-0002-2384-7218
Peter FabianDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.
Thomas P LozitoDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.ORCID 0000-0002-6855-3571
Neil SegilDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.ORCID 0000-0002-0441-2067
Ksenia GnedevaDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.ORCID 0000-0002-3870-9256
J Gage CrumpDepartment of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90033.ORCID 0000-0002-3209-0026

Funding

Training in Hearing & Communication NeuroscienceT32DC009975 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Christopher A Shera · 2009 to 2026
$5.0M
Why Don’t Lizards Regenerate Perfect Tails Like Salamanders?R01GM115444 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LOZITO, THOMAS PETER · 2016 to 2025
$3.3M
Hippo-mediated control of growth and regeneration in the inner ear sensory organsR01DC020268 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Ksenia Gnedeva · 2023 to 2026
$1.5M
Species-Specific Epigenetic Basis of Zebrafish Inner Ear Hair Cell RegenerationF31DC020633 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI SHI, TUO · 2022 to 2024
$133k
HHS | NIH | National Institute on Deafness and Other Communication Disorders (NIDCD) R01DC020268NIDCD NIH HHS F31 DC020633NIDCD NIH HHS R01 DC020268NIDCD NIH HHS T32 DC009975NIGMS NIH HHS R01 GM115444
6 · The paper itself

Abstract

During tissue regeneration, lineage-related cells can switch their fate to replace missing cells. This cell plasticity is particularly prominent in more regenerative vertebrates such as zebrafish, yet the molecular basis by which cells transdifferentiate into another cell type upon injury remains unclear. Here, we investigate the epigenetic basis of regenerative transdifferentiation in the inner ear, where supporting cells (SCs) generate mechanosensory hair cells (HCs) upon damage. By comparing the chromatin landscapes in regenerative zebrafish and green anole lizards versus nonregenerative mice, we identified a class of enhancers that function in progenitors to generate HCs and then are selectively maintained in SCs of regenerative vertebrates to regenerate HCs. In particular, we uncovered a syntenic class of long-range enhancers for

Indexed as

Basic Helix-Loop-Helix ProteinsCell TransdifferentiationEar, InnerEnhancer Elements, GeneticHair Cells, AuditoryRegenerationZebrafishAnimalsCell DifferentiationLizardsMiceZebrafish ProteinsAtoh1 protein, mouseBasic Helix-Loop-Helix ProteinsZebrafish ProteinsAtoh1enhancersinner earregenerationtransdifferentiation

Identifiers

PMID39671177
PMCPMC11665905

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.