Evidence map›Paper›PMID 39668336›Full record

ArticleBriefings in bioinformatics2024

Few-shot classification of Cryo-ET subvolumes with deep Brownian distance covariance.

Xueshi Yu, Renmin Han, Haitao Jiao, Wenjia Meng

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xueshi YuSchool of Software, Shandong University, 1500 Shunhua Road, 250101 Jinan, China.
Renmin HanResearch Center for Mathematics and Interdisciplinary Sciences, Shandong University, 72 Binhai Road, 266000 Qingdao, China.
Haitao JiaoJinan Center For Disease Control And Prevention, Shandong University, 2 Weiliu Road, 250021 Jinan, China.
Wenjia MengSchool of Software, Shandong University, 1500 Shunhua Road, 250101 Jinan, China.

Funding

National Key Research and Development Program of China 2021YFF0704300National Natural Science Foundation of China 62206158Natural Science Foundation of Shandong Province ZR2022QF097SDU's Biomedical Research Center for Structural AnalysisShandong University Young Scholar Future Plan, and Instrument Improvement Funds of Shandong University Public Technology Platform ts20230204
6 · The paper itself

Abstract

Few-shot learning is a crucial approach for macromolecule classification of the cryo-electron tomography (Cryo-ET) subvolumes, enabling rapid adaptation to novel tasks with a small support set of labeled data. However, existing few-shot classification methods for macromolecules in Cryo-ET consider only marginal distributions and overlook joint distributions, failing to capture feature dependencies fully. To address this issue, we propose a method for macromolecular few-shot classification using deep Brownian Distance Covariance (BDC). Our method models the joint distribution within a transfer learning framework, enhancing the modeling capabilities. We insert the BDC module after the feature extractor and only train the feature extractor during the training phase. Then, we enhance the model's generalization capability with self-distillation techniques. In the adaptation phase, we fine-tune the classifier with minimal labeled data. We conduct experiments on publicly available SHREC datasets and a small-scale synthetic dataset to evaluate our method. Results show that our method improves the classification capabilities by introducing the joint distribution.

Indexed as

Cryoelectron MicroscopyAlgorithmsDeep LearningElectron Microscope TomographyMacromolecular SubstancesMacromolecular SubstancesCryo-ETfew-shot learningjoint distributionmacromolecules classification

Identifiers

PMID39668336
PMCPMC11637689

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.