Evidence map›Paper›PMID 39666116›Full record

ArticleArchives of virology2024

Molecular characterization of a novel victorivirus isolated from Stagonosporopsis citrulli.

Xiaofang Ma, Xing Zhang, Lifeng Zhai, Yingchun Jiang, Peter Moffett, Yu Zhang, Fang Song, Xin Song, Zhijing Wang, Ligang He and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Xiaofang MaHubei Key Laboratory of Germplasm Innovation and Utilization of Fruit trees, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, 430064, P. R. China. 850660625@qq.com.ORCID http://orcid.org/0000-0003-3633-4056
Xing ZhangCollege of Life Science and Technology, Yangtze Normal University, Chongqing, 408000, China.
Lifeng ZhaiCollege of Life Science and Technology, Yangtze Normal University, Chongqing, 408000, China.
Yingchun JiangHubei Key Laboratory of Germplasm Innovation and Utilization of Fruit trees, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, 430064, P. R. China.
Peter MoffettCentre SÈVE, Département de Biologie, Université de Sherbrooke, 2500 Blvd. de l'Université, Sherbrooke, QC, J1K 2R1, Canada.
Yu ZhangHubei Key Laboratory of Germplasm Innovation and Utilization of Fruit trees, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, 430064, P. R. China.
Fang SongHubei Key Laboratory of Germplasm Innovation and Utilization of Fruit trees, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, 430064, P. R. China.
Xin SongHubei Key Laboratory of Germplasm Innovation and Utilization of Fruit trees, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, 430064, P. R. China.
Zhijing WangHubei Key Laboratory of Germplasm Innovation and Utilization of Fruit trees, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, 430064, P. R. China.
Ligang HeHubei Key Laboratory of Germplasm Innovation and Utilization of Fruit trees, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, 430064, P. R. China.
Shengmei JiCollege Of Horticulture & Forestry Sciences, Hubei Vocational College of Bio-Technology, Wuhan, Hubei, 430070, P. R. China.
Liming WuHubei Key Laboratory of Germplasm Innovation and Utilization of Fruit trees, Research Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, 430064, P. R. China. wuliming2005@126.com.

Funding

Hubei Province Agricultural Science and Technology Innovation 2024-620-000-001-023Key research and development program of Hubei province 2022BBA153National Natural Science Foundation of China 32102167The Scientists From Overseas Program of Hubei Province 2023DJC020
6 · The paper itself

Abstract

Members of the fungal genus Stagonosporopsis are important plant pathogens that can cause severe disease on a wide range of economically important plants and crops. Here, a novel victorivirus, tentatively named "Stagonosporopsis citrulli victorivirus 1" (SciVV1), was isolated from S. citrulli isolate HS2-8. The SciVV1 genome is 5,163 nucleotides in length, with a predicted GC content of 63.85%, and contains two open reading frames (ORF1 and ORF2), which overlap at an AUGA sequence. ORF1 and ORF2 are predicted to encode a coat protein (CP) and an RNA-dependent RNA polymerase (RdRp). A phylogenetic tree based on RdRp amino acid (aa) sequences showed that SciVV1 clustered together with members of the genus Victorivirus in the family Pseudototiviridae. Our results indicate that SciVV1 is a novel victorivirus. This is the first report of the complete genome sequence of SciVV1 infecting S. citrulli.

Indexed as

Genome, ViralOpen Reading FramesPhylogenyPlant DiseasesBase CompositionCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, ViralTotiviridaeViral ProteinsCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

PMID39666116

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.