Evidence map›Paper›PMID 39665285›Full record

ArticleJournal of chemical information and modeling2024

MoleQCage: Geometric High-Throughput Screening for Molecular Caging Prediction.

Alexander Kravberg, Didier Devaurs, Anastasiia Varava, Lydia E Kavraki, Danica Kragic

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexander KravbergSchool of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm 10044, Sweden.ORCID 0000-0002-9001-7708
Didier DevaursDepartment of Computer and Information Sciences, University of Strathclyde, Glasgow G1 1XH, United Kingdom.ORCID 0000-0002-3415-9816
Anastasiia VaravaSchool of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm 10044, Sweden.
Lydia E KavrakiDepartment of Computer Science, Rice University, Houston, Texas 77005, United States.ORCID 0000-0003-0699-8038
Danica KragicSchool of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm 10044, Sweden.ORCID 0000-0003-2965-2953

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although being able to determine whether a host molecule can enclose a guest molecule and form a caging complex could benefit numerous chemical and medical applications, the experimental discovery of molecular caging complexes has not yet been achieved at scale. Here, we propose MoleQCage, a simple tool for the high-throughput screening of host and guest candidates based on an efficient robotics-inspired geometric algorithm for molecular caging prediction, providing theoretical guarantees and robustness assessment. MoleQCage is distributed as Linux-based software with a graphical user interface and is available online at https://hub.docker.com/r/dantrigne/moleqcage in the form of a Docker container. Documentation and examples are available as Supporting Information and online at https://hub.docker.com/r/dantrigne/moleqcage.

Indexed as

AlgorithmsHigh-Throughput Screening AssaysSoftwareUser-Computer Interface

Identifiers

PMID39665285
PMCPMC11684736

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.