Evidence map›Paper›PMID 39664235›Full record

ArticleCanada communicable disease report = Releve des maladies transmissibles au Canada2024

Nayla Léveillé, Floriane Point, Josée Houde, Michael Hall, Hafid Souhaline, Marie-Andrée Leblanc, Pierre-Marie Akochy, Simon Grandjean Lapierre

Abstract read
In one paragraph

Article in Canada communicable disease report = Releve des maladies transmissibles au Canada, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nayla LéveilléFaculté de Médecine, Département de Médicine, Université de Montréal, Montréal, QC.
Floriane PointImmunopathology Axis, Centre de recherche du Centre hospitalier de l'Université de Montréal, Montréal, QC.
Josée HoudeMicrobiology Department, Centre hospitalier de l'Université de Montréal, Montréal, QC.
Michael HallEuropean Bioinformatics Institute (EMBL-EBI), Cambridgeshire, United Kingdom.
Hafid SouhalineNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB.
Marie-Andrée LeblancDirection générale adjointe de la protection de la santé publique, Ministère de la Santé et des Services sociaux, Québec, QC.
Pierre-Marie AkochyDépartement de mycobactériologie, Laboratoire de santé publique du Québec (LSPQ), Québec, QC.
Simon Grandjean LapierreImmunopathology Axis, Centre de recherche du Centre hospitalier de l'Université de Montréal, Montréal, QC.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Mycobacterial culture is routinely performed to diagnose tuberculosis (TB) in Canada. Globally, meta-analyses suggest that up to 2% of positive cultures are falsely positive for Methods: Patients' epidemiological risk factors and clinical presentations were reviewed. The trajectories of pre- and per-analytic samples were retraced to identify potential cross-contamination events. Tuberculosis isolates were characterized by MIRU-VNTR and WGS using Oxford Nanopore Technology (ONT). The bioinformatic pipeline tbpore (v0.7.1) cluster was used for phylogenetic analyses. Results: Two patients had previous exposure to endemic settings and clinical symptoms compatible with TB. Culture media inoculation overlapped in time for four patients, including one with suspected pulmonary cavitary disease and an organ donor whose organs had been transplanted in three different receivers. The MIRU-VNTR and WGS typing confirmed isolates from those four patients to be identical. Conclusion: Clinical, laboratory and molecular typing data, including results from ONT sequencing, were considered sufficiently robust to confirm laboratory cross-contamination and TB therapy was discontinued including in all organ transplant recipients.

Indexed as

contaminationnext-generation sequencingoutbreaktransplantationtuberculosis

Identifiers

PMID39664235
PMCPMC11629878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.