Evidence map›Paper›PMID 39663592›Full record

ArticleAutophagy2025

USP4 depletion-driven RAB7A ubiquitylation impairs autophagosome-lysosome fusion and aggravates periodontitis.

Sen Kang, Shuxin Liu, Xian Dong, Haoyu Li, Yuanyi Qian, Anna Dai, Wentao He, Xiaojun Li, Qianming Chen, Huiming Wang and 1 more

Abstract read
In one paragraph

Article in Autophagy, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. The deubiquitinase USP4 stabilizes the SCFNature communications · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Frontiers in pharmacology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sen KangStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Shuxin LiuStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Xian DongStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Haoyu LiStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Yuanyi QianStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Anna DaiStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Wentao HeStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Xiaojun LiStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Qianming ChenStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Huiming WangStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.
Pei-Hui DingStomatology Hospital, School of Stomatology, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0001-6147-1787

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Periodontitis, a prevalent and chronic inflammatory disease, is intricately linked with macroautophagy/autophagy, which has a dual role in maintaining periodontal homeostasis. Despite its importance, the precise interplay between autophagy and periodontitis pathogenesis remains to be fully elucidated. In this study, our investigation revealed that the ubiquitination of RAB7A, mediated by reduced levels of the deubiquitinating enzyme USP4 (ubiquitin specific peptidase 4), disrupts normal lysosomal trafficking and autophagosome-lysosome fusion, thereby contributing significantly to periodontitis progression. Specifically, through genomic and histological analysis of clinical gingival samples, we observed a decreased RAB7A expression and impaired autophagic activity in periodontitis. This was further substantiated through experimental periodontitis mice, where RAB7A inactivation was shown to directly affect autophagy efficiency and drive periodontitis progression. Next, we explored the function of active RAB7A to promote lysosomal trafficking dynamics and autophagosome-lysosome fusion, which was inhibited by RAB7A ubiquitination in macrophages stimulated by

Indexed as

AutophagosomesLysosomesPeriodontitisrab7 GTP-Binding ProteinsUbiquitin-Specific ProteasesAnimalsAutophagyGene Expression RegulationGingivaHumansMacrophagesMiceMice, Inbred C57BLPorphyromonas gingivalisSingle-Cell Gene Expression AnalysisTHP-1 Cellsrab7 GTP-Binding Proteinsrab7 GTP-binding proteins, mouseRas-related protein Rab-7aUbiquitin-Specific ProteasesUSP4 protein, humanUsp4 protein, mouseAutophagyGTP-RAB7AIL1Bporphyromonas gingivalisubiquitination

Identifiers

PMID39663592
PMCPMC11925113

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.