Evidence map›Paper›PMID 39663332›Full record

ArticleInflammation2025

Bifidobacterium longum Metabolite Indole-3-Carboxaldehyde Blocks HDAC3 and Inhibits Macrophage NLRP3 Inflammasome Activation in Intestinal Ischemia/Reperfusion Injury.

Yan Miao, Mian Wang, Hao Sun, Yujie Zhang, Wei Zhou, Wanli Yang, Lili Duan, Liaoran Niu, Zhenshun Li, Junfeng Chen and 13 more

Abstract read
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In one paragraph

Article in Inflammation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Yan MiaoDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Mian WangDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Hao SunDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Yujie ZhangDepartment of Histology and Embryology, School of Basic Medicine, Xi'an Medical University, Xi'an, 710032, Shaanxi, P.R. China.
Wei ZhouDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Wanli YangDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Lili DuanDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Liaoran NiuDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Zhenshun LiDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Junfeng ChenDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Yiding LiDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Aqiang FanDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Qibin XieDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Siyu WeiDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Han BaiDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Chenyang WangDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Qian ChenDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Xiangjie WangDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Yunlong LiDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Jinqiang LiuDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China.
Yu HanDepartment of Otolaryngology, Xijing Hospital, Air Force Medical University, Xi'an, 710032, Shaanxi, P.R. China.
Daiming FanState Key Laboratory of Holistic Integrative Management of Gastrointestinal Cancers and National Clinical Research Center for Digestive Diseases, Xijing Hospital of Digestive Diseases, Air Force Medical University, Xi'an, 710032, Shaanxi, P.R. China.
Liu HongDepartment of Digestive Surgery, Xijing Hospital of Digestive Diseases, Air Force Medical University, No. 127, Changle West Road, Xi'an, 710032, Shaanxi, P.R. China. hongliufmmu@163.com.

Funding

National Clinical Research Center for Digestive Diseases 2015BAI13B07National Natural Science Foundation of China 82372693Scientific Foundation of Shaanxi Province S2019ZDCXL01-02-01
6 · The paper itself

Abstract

Indole-3-carboxaldehyde (3-IAld), a tryptophan metabolite derived from gut microbiota, has been reported to protect the intestine against radiation injury. This study aimed to clarify the role of Bifidobacterium longum (B. longum) and its metabolite indole-3-carboxaldehyde (3-IAld) in the pathophysiology of intestinal ischemia/reperfusion (II/R) injury. Superior mesenteric artery occlusion and reperfusion were performed to establish II/R mice, and pathological injury in II/R mice was evaluated. II/R mice showed impaired gut microbiota diversity and reduced abundance of B. longum in the intestines. Transplantation of B. longum mitigated II/R injury by protecting the integrity of the intestinal barrier and reducing inflammatory response. The 3-IAld level increased after transplantation of B. longum, and 3-IAld treatment inhibited the inflammatory response of bone marrow-derived macrophages (BMDM). Histone deacetylase 3 (HDAC3) was a target of 3-IAld, and HDAC3 was translocated to mitochondria to promote mitochondrial fatty acid oxidation (FAO) during macrophage inflammasome formation. HDAC3 overexpression promoted the formation of macrophage inflammasomes in intestinal tissues. Overall, this study confirmed the beneficial effects of B. longum in combating II/R injury through HDAC3-mediated control of mitochondrial FAO and macrophage inflammasome formation via 3-IAld.

Indexed as

Bifidobacterium longumHistone DeacetylasesIndolesInflammasomesIntestinesMacrophagesNLR Family, Pyrin Domain-Containing 3 ProteinReperfusion InjuryAnimalsGastrointestinal MicrobiomeHistone Deacetylase 3MaleMiceMice, Inbred C57BLHistone Deacetylase 3Histone Deacetylasesindole-3-carbaldehydeIndolesInflammasomesNLR Family, Pyrin Domain-Containing 3 ProteinNlrp3 protein, mouse3-carboxaldehydeBifidobacterium longumHDAC3Intestinal ischemia/reperfusionMitochondrial fatty acid oxidation

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.