Evidence map›Paper›PMID 39663142›Full record

ArticleBMJ open ophthalmology2024

Customised 96-ocular TaqMan (iCAM) microarray PCR card for rapid diagnosis of microbial keratitis.

Yunfei Yang, Ahmed Roble, Rashmi Deshmukh, James Myerscough, Martin D Curran, Madhavan S Rajan

Abstract read
In one paragraph

Article in BMJ open ophthalmology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yunfei YangDepartment of Ophthalmology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.ORCID 0000-0002-7130-9801
Ahmed RobleCambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
Rashmi DeshmukhDepartment of Ophthalmology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
James MyerscoughDepartment of Ophthalmology, Southend Hospital, Westcliff-on-Sea, UK.
Martin D CurranCambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
Madhavan S RajanDepartment of Ophthalmology, Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK mr2019@cam.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo validate the diagnostic performance of a custom 96-micro-organism TaqMan PCR card (iCAM) for microbial keratitis (MK) from a single corneal epithelial sample.

methodsPatients over the age of 18 referred to Cambridge University Hospital with MK were recruited in this single-site prospective cohort study between September 2021 and January 2023. An ocular-specific, customised microarray card (iCAM) was constructed according to primer and probe nucleotide sequences developed in our department to detect bacteria, viruses,

results38 corneal epithelial samples from 32 patients with MK and 4 control samples from healthy participants were obtained from 36 consecutive patients. A causative microbe was isolated in 15/34 samples (44%) using the iCAM test, compared with 15 by conventional methods (44%). iCAM test processing time varied between 6 and 24 hours compared with up to 7 days for conventional tests. Combined, the microbial detection rate was 65%, with the correlation between methods at 62%. The iCAM test could detect all major micro-organism groups with 56% sensitivity and 60% PPV.

conclusionsThe iCAM test can detect bacterial, fungal, viral and protozoan organisms using one corneal epithelial sample. The limitations include small patient cohort size and reduced volume of available corneal epithelial sample when shared between the iCAM PCR test and conventional culture methods utilised in the study. A multicentre trial is being planned to validate the clinical impact of using iCAM test on accuracy of diagnosis, early institution of appropriate antimicrobials and clinical outcomes. TRIAL REGISTRATION NUMBER: ISRCTN17422545.

Indexed as

BacteriaFungiAdultAgedAged, 80 and overCorneal UlcerDNA, BacterialEye Infections, BacterialEye Infections, FungalFemaleHumansKeratitisMaleMiddle AgedPolymerase Chain ReactionProspective StudiesDNA, BacterialCorneaDiagnostic tests/InvestigationInfectionMicrobiologyPublic health

Identifiers

PMID39663142
PMCPMC11647283

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.