Evidence map›Paper›PMID 39662894›Full record

ArticleJournal of medical Internet research2024

Development and Validation of a Literature Screening Tool: Few-Shot Learning Approach in Systematic Reviews.

Phongphat Wiwatthanasetthakarn, Wanchana Ponthongmak, Panu Looareesuwan, Amarit Tansawet, Pawin Numthavaj, Gareth J McKay, John Attia, Ammarin Thakkinstian

Abstract readValidation Study
In one paragraph

Article in Journal of medical Internet research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Using a large language model as a third reviewer to augment dual human full-text screening in orthopaedic systematic reviews.Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Phongphat WiwatthanasetthakarnDepartment of Clinical Epidemiology and Biostatistics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.ORCID 0009-0003-8656-1932
Wanchana PonthongmakDepartment of Clinical Epidemiology and Biostatistics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.ORCID 0000-0002-9896-1349
Panu LooareesuwanDepartment of Clinical Epidemiology and Biostatistics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.ORCID 0000-0001-8179-9149
Amarit TansawetDepartment of Research and Medical Innovation, Faculty of Medicine Vajira Hospital, Navamindradhiraj University, Bangkok, Thailand.ORCID 0000-0002-2040-7970
Pawin NumthavajDepartment of Clinical Epidemiology and Biostatistics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.ORCID 0000-0002-1369-2945
Gareth J McKayCentre for Public Health, Queen's University Belfast, Belfast, United Kingdom.ORCID 0000-0001-8197-6280
John AttiaCentre for Clinical Epidemiology and Biostatistics, School of Medicine and Public Health, University of Newcastle, New South Wales, Australia.ORCID 0000-0001-9800-1308
Ammarin ThakkinstianDepartment of Clinical Epidemiology and Biostatistics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.ORCID 0000-0001-9991-386X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSystematic reviews (SRs) are considered the highest level of evidence, but their rigorous literature screening process can be time-consuming and resource-intensive. This is particularly challenging given the rapid pace of medical advancements, which can quickly make SRs outdated. Few-shot learning (FSL), a machine learning approach that learns effectively from limited data, offers a potential solution to streamline this process. Sentence-bidirectional encoder representations from transformers (S-BERT) are particularly promising for identifying relevant studies with fewer examples.

objectiveThis study aimed to develop a model framework using FSL to efficiently screen and select relevant studies for inclusion in SRs, aiming to reduce workload while maintaining high recall rates.

methodsWe developed and validated the FSL model framework using 9 previously published SR projects (2016-2018). The framework used S-BERT with titles and abstracts as input data. Key evaluation metrics, including workload reduction, cosine similarity score, and the number needed to screen at 100% recall, were estimated to determine the optimal number of eligible studies for model training. A prospective evaluation phase involving 4 ongoing SRs was then conducted. Study selection by FSL and a secondary reviewer were compared with the principal reviewer (considered the gold standard) to estimate the false negative rate.

resultsModel development suggested an optimal range of 4-12 eligible studies for FSL training. Using 4-6 eligible studies during model development resulted in similarity thresholds for 100% recall, ranging from 0.432 to 0.636, corresponding to a workload reduction of 51.11% (95% CI 46.36-55.86) to 97.67% (95% CI 96.76-98.58). The prospective evaluation of 4 SRs aimed for a 50% workload reduction, yielding numbers needed to screen 497 to 1035 out of 995 to 2070 studies. The false negative rate ranged from 1.87% to 12.20% for the FSL model and from 5% to 56.48% for the second reviewer compared with the principal reviewer.

conclusionsOur FSL framework demonstrates the potential for reducing workload in SR screening by over 50%. However, the model did not achieve 100% recall at this threshold, highlighting the potential for omitting eligible studies. Future work should focus on developing a web application to implement the FSL framework, making it accessible to researchers.

Indexed as

Machine LearningSystematic Reviews as TopicHumansWorkloaddeep learningfew shots learningnatural language processingS-BERTsentence-bidirectional encoder representations from transformersstudy selectionsystematic review

Identifiers

PMID39662894
PMCPMC11669879

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.