Evidence map›Paper›PMID 39661689›Full record

ArticleScience advances2024

Nucleo-cytoplasmic environment modulates spatiotemporal p53 phase separation.

Debalina Datta, Ambuja Navalkar, Arunima Sakunthala, Ajoy Paul, Komal Patel, Shalaka Masurkar, Laxmikant Gadhe, Shouvik Manna, Arpita Bhattacharyya, Shinjinee Sengupta and 10 more

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Proteasomal proteolysis in p62 condensates directs tumor suppression or growth depending on their subcellular localization.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Review
  10. Internal Phase Separation in Synthetic DNA Condensates.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  11. Review
  12. Article
  13. Article
  14. Liquid condensates: a new barrier to loop extrusion?Cellular and molecular life sciences : CMLS · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Debalina DattaDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0001-8923-0248
Ambuja NavalkarDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0002-7407-442X
Arunima SakunthalaDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0001-7483-6327
Ajoy PaulDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0003-4063-5919
Komal PatelDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0003-2976-7638
Shalaka MasurkarDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0002-1571-0975
Laxmikant GadheDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0002-3157-2998
Shouvik MannaDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Arpita BhattacharyyaDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Shinjinee SenguptaDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0002-8557-5780
Manisha PoudyalDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Jyoti DeviDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Ajay Singh SawnerDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Pradeep KaduDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Ranjit ShawDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Satyaprakash PandeyDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Semanti MukherjeeDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Nitisha GahlotDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.
Kundan SenguptaChromosome Biology Lab, Indian Institute of Science Education and Research, Pune, India.
Samir K MajiDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai 400076, India.ORCID 0000-0002-9110-1565

Funding

DBT-Wellcome Trust India Alliance IA/E/17/1/503663Wellcome Trust
6 · The paper itself

Abstract

Liquid-liquid phase separation of various transcription factors into biomolecular condensates plays an essential role in gene regulation. Here, using cellular models and in vitro studies, we show the spatiotemporal formation and material properties of p53 condensates that might dictate its function. In particular, p53 forms liquid-like condensates in the nucleus of cells, which can bind to DNA and perform transcriptional activity. However, cancer-associated mutations promote misfolding and partially rigidify the p53 condensates with impaired DNA binding ability. Irrespective of wild-type and mutant forms, the partitioning of p53 into cytoplasm leads to the condensate formation, which subsequently undergoes rapid solidification. In vitro studies show that abundant nuclear components such as RNA and nonspecific DNA promote multicomponent phase separation of the p53 core domain and maintain their liquid-like property, whereas specific DNA promotes its dissolution into tetrameric functional p53. This work provides mechanistic insights into how the life cycle and DNA binding properties of p53 might be regulated by phase separation.

Indexed as

Cell NucleusCytoplasmDNATumor Suppressor Protein p53Biomolecular CondensatesHumansMutationPhase SeparationProtein BindingDNATP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID39661689
PMCPMC11633762

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.