Evidence map›Paper›PMID 39661503›Full record

ArticleSTAR protocols2024

Protocol for cellular RNA G-quadruplex profiling using G4RP.v2.

Jérémie Mitteaux, David Monchaud

Abstract read
In one paragraph

Article in STAR protocols, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jérémie MitteauxInstitut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB), CNRS UMR 6302, 9 Avenue Alain Savary, 21078 Dijon, France. Electronic address: jeremie.mitteaux@u-bourgogne.fr.
David MonchaudInstitut de Chimie Moléculaire de l'Université de Bourgogne (ICMUB), CNRS UMR 6302, 9 Avenue Alain Savary, 21078 Dijon, France. Electronic address: david.monchaud@u-bourgogne.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The isolation of G-quadruplexes (G4s) from human cells using specific molecular tools constitutes an invaluable step forward in uncovering the biology of these higher-order DNA and RNA structures. Here, we present an improved version of the G4-RNA precipitation (G4RP) protocol developed to identify RNA G4s from human cancer cells. We describe steps for cell treatment and lysis, chemoprecipitation of G4s using TASQ tools, go/no-go steps, and quantitative reverse-transcription PCR (RT-qPCR) quantification and analysis. For complete details on the use and execution of this protocol, please refer to Mitteaux et al.

Indexed as

G-QuadruplexesRNACell Line, TumorHumansRNABiophysicsChemistryGeneticsMolecular Biology

Identifiers

PMID39661503
PMCPMC11697541

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.