Evidence map›Paper›PMID 39661194›Full record

ReviewApplied microbiology and biotechnology2024

Metabolic mechanism of lignin-derived aromatics in white-rot fungi.

Hiroyuki Kato, Daisuke Miura, Masashi Kato, Motoyuki Shimizu

Abstract readReview
In one paragraph

Review in Applied microbiology and biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Isolation, Identification ofInternational journal of molecular sciences · 2026
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  12. First Report ofPathogens (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hiroyuki KatoGraduate School of Agriculture, Faculty of Agriculture, Meijo University, Nagoya, Aichi, 468-8502, Japan. 233561502@ccmailg.meijo-u.ac.jp.
Daisuke MiuraBiomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, 305-8566, Japan. daisuke.miura@aist.go.jp.ORCID http://orcid.org/0000-0003-3245-4798
Masashi KatoGraduate School of Agriculture, Faculty of Agriculture, Meijo University, Nagoya, Aichi, 468-8502, Japan.
Motoyuki ShimizuGraduate School of Agriculture, Faculty of Agriculture, Meijo University, Nagoya, Aichi, 468-8502, Japan. moshimi@meijo-u.ac.jp.ORCID http://orcid.org/0000-0002-6907-6367

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White-rot fungi, such as Phanerochaete chrysosporium, play a crucial role in biodegrading lignocellulosic biomass including cellulose, hemicellulose, and lignin. These fungi utilise various extracellular and intracellular enzymes, such as lignin peroxidases, manganese peroxidases, versatile peroxidases, monooxygenases, and dioxygenases, to degrade lignin and lignin-derived aromatics, thereby significantly contributing to the global carbon cycle with potential applications in industrial bioprocessing and bioremediation. Although the metabolism of lignin fragments in P. chrysosporium has been studied extensively, the enzymes involved in fragment conversion remain largely unknown. This review provides an overview of the current knowledge regarding the metabolic pathways of lignin and its fragments by white-rot fungi. Recent studies have elucidated the intricate metabolic pathways and regulatory mechanisms of lignin-derived aromatic degradation by focusing on flavoprotein monooxygenases, intradiol dioxygenases, homogentisate dioxygenase-like proteins, and cytochrome P450 monooxygenases. Metabolic regulation of these enzymes demonstrates the adaptability of white-rot fungi in degrading lignin and lignin-derived aromatics. The interplay between the central metabolic pathways, haem biosynthesis, and haem-dependent NAD(P)H regeneration highlights the complexity of lignin degradation in white-rot fungi. These insights improve our understanding of fungal metabolism and pave the way for future studies aimed at leveraging these fungi for sustainable biotechnological applications. KEY POINTS: • White-rot fungi use enzymes to degrade lignin, and play a role in the carbon cycle. • Oxygenases are key enzymes for converting lignin-derived aromatics. • White-rot fungi adapt to metabolic changes by controlling the TCA/glyoxylate bicycle.

Indexed as

LigninMetabolic Networks and PathwaysPhanerochaeteBiodegradation, EnvironmentalDioxygenasesMixed Function OxygenasesPeroxidasesDioxygenasesLigninlignin peroxidaselignocelluloseMixed Function OxygenasesPeroxidasesDioxygenasesHaemLigninMonooxygenasesNAD(P)H regenerationTCA cycle

Identifiers

PMID39661194
PMCPMC11634970

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.