Evidence map›Paper›PMID 39660924›Full record

ArticlemBio2025

Catabolic pathway acquisition by rhizosphere bacteria readily enables growth with a root exudate component but does not affect root colonization.

Stephan Christel, Alyssa A Carrell, Leah H Hochanadel, Manuel I Villalobos Solis, Paul E Abraham, Sara S Jawdy, Julie E Chaves, Nancy L Engle, Timkhite-Kulu Berhane, Tao Yao and 5 more

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Stephan ChristelBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0003-0021-2452
Alyssa A CarrellBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0003-1142-4709
Leah H HochanadelBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Manuel I Villalobos SolisBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Paul E AbrahamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0003-2685-9123
Sara S JawdyBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Julie E ChavesBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Nancy L EngleBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0003-0290-7987
Timkhite-Kulu BerhaneBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Tao YaoBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Jin-Gui ChenBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Wellington MucheroBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Timothy J TschaplinskiBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Melissa A CreggerBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Joshua K MichenerBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0003-2302-8180

Funding

U.S. Department of Energy (DOE)
6 · The paper itself

Abstract

Horizontal gene transfer (HGT) is a fundamental evolutionary process that plays a key role in bacterial evolution. The likelihood of a successful transfer event is expected to depend on the precise balance of costs and benefits resulting from pathway acquisition. Most experimental analyses of HGT have focused on phenotypes that have large fitness benefits under appropriate selective conditions, such as antibiotic resistance. However, many examples of HGT involve phenotypes that are predicted to provide smaller benefits, such as the ability to catabolize additional carbon sources. We have experimentally simulated the consequences of one such HGT event in the laboratory, studying the effects of transferring a pathway for catabolism of the plant-derived aromatic compound salicyl alcohol between rhizosphere isolates from the

Indexed as

Gene Transfer, HorizontalPlant RootsPseudomonasRhizosphereSoil MicrobiologyBenzyl AlcoholsMetabolic Networks and PathwaysPlant ExudatesBenzyl AlcoholsPlant Exudateshorizontal gene transferplant-microbe interactionsPopulussalicylates

Identifiers

PMID39660924
PMCPMC11708038

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.