Evidence map›Paper›PMID 39660606›Full record

ArticleeLife2024

Impaired myofibroblast proliferation is a central feature of pathologic post-natal alveolar simplification.

Imran S Khan, Christopher Molina, Xin Ren, Vincent C Auyeung, Max Cohen, Tatsuya Tsukui, Amha Atakilit, Dean Sheppard

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. TLR9-mediated innate immune signaling contributes to acetaminophen-induced injury in the developing lung.American journal of physiology. Lung cellular and molecular physiology · 2026
    Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. A Single Early-Life Acetaminophen Exposure Causes Persistent Abnormalities in the Murine Lung.American journal of respiratory cell and molecular biology · 2025
    Article
  8. Review
  9. Stromal heterogeneity in the adult lung delineated by single-cell genomics.American journal of physiology. Cell physiology · 2025
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Imran S KhanDivision of Neonatology, Department of Pediatrics, UCSF, San Francisco, United States.ORCID https://orcid.org/0000-0003-4570-4143
Christopher MolinaCardiovascular Research Institute, UCSF, San Francisco, United States.
Xin RenCardiovascular Research Institute, UCSF, San Francisco, United States.
Vincent C AuyeungCardiovascular Research Institute, UCSF, San Francisco, United States.ORCID https://orcid.org/0000-0001-6273-1595
Max CohenDivision of Pulmonary, Critical Care, Allergy, and Sleep, UCSF, San Francisco, United States.
Tatsuya TsukuiCardiovascular Research Institute, UCSF, San Francisco, United States.ORCID https://orcid.org/0000-0003-3100-6934
Amha AtakilitCardiovascular Research Institute, UCSF, San Francisco, United States.
Dean SheppardCardiovascular Research Institute, UCSF, San Francisco, United States.ORCID https://orcid.org/0000-0002-6277-2036

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Alan Ashworth · 1999 to 2026
$209.7M
Pediatric Scientist Development Program (PSDP) [K12]K12HD000850 · NICHD · YALE UNIVERSITY · PI Sallie R. Permar · 1987 to 2026
$44.1M
MUTIDISCIPLINARY TRAINING PROGRAM IN LUNG DISEASEST32HL007185 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI David J Erle, LAURENCE HUANG · 1985 to 2026
$24.6M
Interventional Targeting of the IRE1alpha-TGFbeta signaling loop in pulmonary fibrosisR01HL145037 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PAPA, FEROZ R, SHEPPARD, DEAN · 2019 to 2022
$3.0M
Fibroblast heterogeneity in pulmonary fibrosisR01HL142568 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHEPPARD, DEAN · 2020 to 2023
$2.9M
Cellular and molecular delineation of pathologic fibroblasts in pulmonary fibrosisR00HL155786 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TSUKUI, TATSUYA · 2023 to 2025
$747k
Illumina NovaSeq 6000 Sequencing SystemS10OD028511 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHOW, ERIC D · 2020 to 2020
$583k
National Institute of Child Health and Human Development HD000850National Institute of Child Health and Human Development Pediatric Scientist Development ProgramNCI NIH HHS P30 CA082103NHLBI NIH HHS HL142568NHLBI NIH HHS HL145037NHLBI NIH HHS R00 HL155786NHLBI NIH HHS R01 HL142568NHLBI NIH HHS R01 HL145037NHLBI NIH HHS T32 HL007185NICHD NIH HHS K12 HD000850NIH HHS S10 OD028511University of California, San Francisco Nina Ireland Program For Lung Health
6 · The paper itself

Abstract

Premature infants with bronchopulmonary dysplasia (BPD) have impaired alveolar gas exchange due to alveolar simplification and dysmorphic pulmonary vasculature. Advances in clinical care have improved survival for infants with BPD, but the overall incidence of BPD remains unchanged because we lack specific therapies to prevent this disease. Recent work has suggested a role for increased transforming growth factor-beta (TGFβ) signaling and myofibroblast populations in BPD pathogenesis, but the functional significance of each remains unclear. Here, we utilize multiple murine models of alveolar simplification and comparative single-cell RNA sequencing to identify shared mechanisms that could contribute to BPD pathogenesis. Single-cell RNA sequencing reveals a profound loss of myofibroblasts in two models of BPD and identifies gene expression signatures of increased TGFβ signaling, cell cycle arrest, and impaired proliferation in myofibroblasts. Using pharmacologic and genetic approaches, we find no evidence that increased TGFβ signaling in the lung mesenchyme contributes to alveolar simplification. In contrast, this is likely a failed compensatory response, since none of our approaches to inhibit TGFβ signaling protect mice from alveolar simplification due to hyperoxia while several make simplification worse. In contrast, we find that impaired myofibroblast proliferation is a central feature in several murine models of BPD, and we show that inhibiting myofibroblast proliferation is sufficient to cause pathologic alveolar simplification. Our results underscore the importance of impaired myofibroblast proliferation as a central feature of alveolar simplification and suggest that efforts to reverse this process could have therapeutic value in BPD.

Indexed as

Bronchopulmonary DysplasiaCell ProliferationMyofibroblastsPulmonary AlveoliTransforming Growth Factor betaAnimalsAnimals, NewbornDisease Models, AnimalFemaleHumansHyperoxiaMiceMice, Inbred C57BLSignal TransductionTransforming Growth Factor betabronchopulmonary dysplasiadevelopmental biologyhyperoxialung developmentmousemyofibroblast

Identifiers

PMID39660606
PMCPMC11634066

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.