Evidence map›Paper›PMID 39660295›Full record

ArticleChemical science2025

Chemical waves in reaction-diffusion networks of small organic molecules.

Arpita Paikar, Xiuxiu Li, Liat Avram, Barbara S Smith, István Sütő, Dezső Horváth, Elisabeth Rennert, Yuqing Qiu, Ágota Tóth, Suriyanarayanan Vaikuntanathan and 1 more

Abstract read
In one paragraph

Article in Chemical science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Arpita PaikarDepartment of Molecular Chemistry and Materials Science, Weizmann Institute of Science Rehovot Israel sergey.semenov@weizmann.ac.il.
Xiuxiu LiDepartment of Molecular Chemistry and Materials Science, Weizmann Institute of Science Rehovot Israel sergey.semenov@weizmann.ac.il.
Liat AvramDepartment of Chemical Research Support, Weizmann Institute of Science Rehovot Israel.ORCID https://orcid.org/0000-0001-6535-3470
Barbara S SmithSchool of Biological and Health Systems Engineering, Arizona State University Tempe Arizona USA.
István SütőDepartment of Physical Chemistry and Materials Science, University of Szeged Szeged Hungary.
Dezső HorváthDepartment of Applied and Environmental Chemistry, University of Szeged Szeged Hungary.ORCID https://orcid.org/0000-0003-3852-6879
Elisabeth RennertGraduate Program in Biophysical Sciences, University of Chicago Chicago IL USA.
Yuqing QiuDepartment of Chemistry, University of Chicago Chicago IL USA.
Ágota TóthDepartment of Physical Chemistry and Materials Science, University of Szeged Szeged Hungary.
Suriyanarayanan VaikuntanathanDepartment of Chemistry, University of Chicago Chicago IL USA.
Sergey N SemenovDepartment of Molecular Chemistry and Materials Science, Weizmann Institute of Science Rehovot Israel sergey.semenov@weizmann.ac.il.ORCID https://orcid.org/0000-0002-5829-2283

Funding

Elucidating biophysical mechanisms for force sensing and control using non-equilibrium statistical mechanics and AIR35GM147400 · NIGMS · UNIVERSITY OF CHICAGO · PI Suriyanarayanan Vaikuntanathan · 2022 to 2026
$1.9M
NIGMS NIH HHS R35 GM147400
6 · The paper itself

Abstract

Chemical waves represent one of the fundamental behaviors that emerge in nonlinear, out-of-equilibrium chemical systems. They also play a central role in regulating behaviors and development of biological organisms. Nevertheless, understanding their properties and achieving their rational synthesis remains challenging. In this work, we obtained traveling chemical waves using synthetic organic molecules. To accomplish this, we ran a thiol-based reaction network in an unstirred flow reactor. Our observations revealed single or multiple waves moving in either the same or opposite directions, a behavior controlled by the geometry of our reactor. A numerical model can fully reproduce this behavior using the proposed reaction network. To better understand the formation of waves, we varied the diffusion coefficient of the fast inhibitor component of the reaction network by attaching polyethylene glycol tails with different lengths to maleimide and studied how these changes affect the properties of the waves and conditions for their sustained production. These studies point towards the importance of the molecular titration network motif in controlling the production of chemical waves in this system. Furthermore, we used machine learning (ML) tools to identify phase boundaries for classes of dynamic behaviors of this system, thus demonstrating the applicability of ML tools for the study of experimental nonlinear reaction-diffusion systems.

Identifiers

PMID39660295
PMCPMC11626756

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.