Evidence map›Paper›PMID 39657765›Full record

ArticleThe Journal of heredity2025

Genome assembly of the winter ant, Prenolepis imparis.

Elizabeth I Cash, Philip S Ward, Merly Escalona, Ruta Sahasrabudhe, Courtney Miller, Erin Toffelmier, Colin Fairbairn, William Seligmann, H Bradley Shaffer, Neil D Tsutsui

Abstract read
In one paragraph

Article in The Journal of heredity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Elizabeth I CashDepartment of Environmental Science, Policy, and Management, University of California-Berkeley, Berkeley, CA, United States.ORCID 0000-0002-1192-3770
Philip S WardDepartment of Entomology and Nematology, University of California-Davis, Davis, CA, United States.ORCID 0000-0002-9019-0383
Merly EscalonaDepartment of Biomolecular Engineering, University of California-Santa Cruz, Santa Cruz, CA, United States.
Ruta SahasrabudheDNA Technologies and Expression Analysis Cores, University of California-Davis, Davis, CA, United States.
Courtney MillerLa Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California-Los Angeles, CA, United States.
Erin ToffelmierLa Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California-Los Angeles, CA, United States.ORCID 0000-0001-6028-8497
Colin FairbairnDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz-Santa Cruz, CA, United States.
William SeligmannDepartment of Ecology and Evolutionary Biology, University of California, Santa Cruz-Santa Cruz, CA, United States.
H Bradley ShafferLa Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California-Los Angeles, CA, United States.
Neil D TsutsuiDepartment of Environmental Science, Policy, and Management, University of California-Berkeley, Berkeley, CA, United States.

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIH HHS S10 OD010786NIH HHS S10 OD018174NIH Shared Instrumentation 1S10OD010786-01Vincent J. Coates Genomics Sequencing Laboratory NIH S10 OD018174
6 · The paper itself

Abstract

The winter ant, Prenolepis imparis, is one of the most common, widespread, and conspicuous ant species in North America. P. imparis is well adapted to cold climates, and consequently, is often noted as the only active ant species during colder months. This specialized life history makes P. imparis a useful model organism for exploring thermal physiology and understanding the potential impacts of a warming climate on insects. Phylogeographic studies have revealed deeply divergent lineages across North America, as well as a single collection of an apparent social parasite in California. In light of its distinctive cold adaptation and recently discovered geographic diversity, a better understanding of the underlying genetic patterns of the winter ant is valuable to future conservation efforts for this species. Here, we present a high-quality genome assembly of P. imparis from Santa Clara County, California. This genome assembly consists of 787 scaffolds spanning 327.3 Mb, with contig N50 of 901.9 kb, scaffold N50 of 18.7 Mb, and BUSCO completeness of 96.5%. This genome assembly provides an essential foundation for future studies of the winter ant and will be particularly useful for understanding the genetic basis of thermal adaptation, cold resistance, chemical ecology, and the resilience of organisms in response to a changing climate.

Indexed as

AntsGenome, InsectAnimalsCaliforniaPhylogeographySeasonsCalifornia Conservation Genomics Projectclimate changecold adaptationFormicidaePrenolepisthermal physiology

Identifiers

PMID39657765
PMCPMC12130434

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.