Evidence map›Paper›PMID 39657052›Full record

ArticleThe Plant cell2025

Boosting transcriptional activities by employing repeated activation domains in transcription factors.

Chaochao He, Yue Liang, Runzhou Chen, Yuxiao Shen, Runhui Li, Tingting Sun, Xing Du, Xiaomei Ni, Junzhong Shang, Yanhong He and 7 more

Abstract read
In one paragraph

Article in The Plant cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Chaochao HeNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0009-0008-5754-5972
Yue LiangNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0009-0001-6527-178X
Runzhou ChenNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0002-0853-9815
Yuxiao ShenNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0009-0006-9233-0956
Runhui LiNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0009-0005-2306-4677
Tingting SunNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0009-0006-1857-8160
Xing DuNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0009-0009-4538-7345
Xiaomei NiNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0009-0001-6885-7794
Junzhong ShangNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0009-0006-0584-9216
Yanhong HeNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0002-3502-5166
Manzhu BaoNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0003-0725-6909
Hong LuoDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA.ORCID 0000-0001-9223-1786
Jihua WangFlower Research Institute of Yunnan Academy of Agricultural Sciences, National Engineering Research Center for Ornamental Horticulture, Kunming 650205, China.ORCID 0000-0003-4887-173X
Pan LiaoDepartment of Biology, Hong Kong Baptist University, Kowloon Tong, Hong Kong SAR 999077, China.ORCID 0000-0002-1156-8916
Chunying KangNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0001-9269-5185
Yao-Wu YuanDepartment of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.ORCID 0000-0003-1376-0028
Guogui NingNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0001-8891-5229

Funding

construction of a modern agricultural industrial technology system CRAS-23National Key Research and Development Program of China 2022YFF1003100National Natural Science Foundation of China 32202528
6 · The paper itself

Abstract

Enhancing the transcriptional activation activity of transcription factors (TFs) has multiple applications in organism improvement, metabolic engineering, and other aspects of plant science, but the approaches remain unclear. Here, we used gene activation assays and genetic transformation to investigate the transcriptional activities of two MYB TFs, PRODUCTION OF ANTHOCYANIN PIGMENT 1 (AtPAP1) from Arabidopsis (Arabidopsis thaliana) and EsMYBA1 from Epimedium (Epimedium sagittatum), and their synthetic variants in a range of plant species from several families. Using anthocyanin biosynthesis as a convenient readout, we discovered that homologous naturally occurring TFs showed differences in the transcriptional activation ability and that similar TFs induced large changes in the genetic program when heterologously expressed in different species. In some cases, shuffling the DNA-binding domains and transcriptional activation domains (ADs) between homologous TFs led to synthetic TFs that had stronger activation potency than the original TFs. More importantly, synthetic TFs derived from MYB, NAC, bHLH, and ethylene-insensitive3-like (EIL) family members containing tandemly repeated ADs had greatly enhanced activity compared to their natural counterparts. These findings enhance our understanding of TF activity and demonstrate that employing tandemly repeated ADs from natural TFs is a simple and widely applicable strategy to enhance the activation potency of synthetic TFs.

Indexed as

AnthocyaninsArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantTranscription FactorsPlant ProteinsPlants, Genetically ModifiedTranscriptional ActivationAnthocyaninsArabidopsis ProteinsAT1G56650 protein, ArabidopsisPlant ProteinsTranscription Factors

Identifiers

PMID39657052
PMCPMC11823830

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.