Evidence map›Paper›PMID 39656918›Full record

ArticleNucleic acids research2025

The C-terminal PHDVC5HCH tandem domain of NSD2 is a combinatorial reader of unmodified H3K4 and tri-methylated H3K27 that regulates transcription of cell adhesion genes in multiple myeloma.

Andrea Berardi, Charlotte Leonie Kaestner, Michela Ghitti, Giacomo Quilici, Paolo Cocomazzi, Jianping Li, Federico Ballabio, Chiara Zucchelli, Stefan Knapp, Jonathan D Licht and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Many faces of mammalian NSD methyltransferases.Cellular & molecular biology letters · 2026
    Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Andrea BerardiBiomolecular NMR Laboratory, Division of Genetics and Cell Biology c/o IRCCS Ospedale San Raffaele Via Olgettina 58, 20132 Milan, Italy.
Charlotte Leonie KaestnerDivision of Hematology/Oncology, The University of Florida Health Cancer, 2033 Mowry Road, Gainesville, FL 32610, USA.
Michela GhittiBiomolecular NMR Laboratory, Division of Genetics and Cell Biology c/o IRCCS Ospedale San Raffaele Via Olgettina 58, 20132 Milan, Italy.
Giacomo QuiliciBiomolecular NMR Laboratory, Division of Genetics and Cell Biology c/o IRCCS Ospedale San Raffaele Via Olgettina 58, 20132 Milan, Italy.
Paolo CocomazziBiophysics Institute, CNR-IBF, Via Corti 12, 20133 Milan, Italy.
Jianping LiDivision of Hematology/Oncology, The University of Florida Health Cancer, 2033 Mowry Road, Gainesville, FL 32610, USA.
Federico BallabioBiomolecular NMR Laboratory, Division of Genetics and Cell Biology c/o IRCCS Ospedale San Raffaele Via Olgettina 58, 20132 Milan, Italy.ORCID 0000-0001-5702-3674
Chiara ZucchelliBiomolecular NMR Laboratory, Division of Genetics and Cell Biology c/o IRCCS Ospedale San Raffaele Via Olgettina 58, 20132 Milan, Italy.
Stefan KnappInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe-University, 60438 Frankfurt am Main, Germany.ORCID 0000-0001-5995-6494
Jonathan D LichtDivision of Hematology/Oncology, The University of Florida Health Cancer, 2033 Mowry Road, Gainesville, FL 32610, USA.
Giovanna MuscoBiomolecular NMR Laboratory, Division of Genetics and Cell Biology c/o IRCCS Ospedale San Raffaele Via Olgettina 58, 20132 Milan, Italy.ORCID 0000-0002-0469-2994

Funding

University of Florida Health Cancer Center Support GrantP30CA247796 · NCI · UNIVERSITY OF FLORIDA · PI Alison Ivey · 2023 to 2026
$10.9M
The Role of MMSET in the Pathogenesis and Progression of Lymphoid MalignancyR01CA195732 · NCI · UNIVERSITY OF FLORIDA · PI LICHT, JONATHAN D. · 2016 to 2020
$1.8M
Associazione Italiana Ricerca sul Cancro IG-21440CINECAEMBOFEBSFlorida Department of Health 21L05Leukemia and Lymphoma society 7021-20Myeloma Solution FundNCI NIH HHS P30 CA247796NCI NIH HHS R01 CA195732NIH HHS P30CA247796PRACE 2020225324University of Florida Health Cancer Center
6 · The paper itself

Abstract

Histone methyltransferase NSD2 (MMSET) overexpression in multiple myeloma (MM) patients plays an important role in the development of this disease subtype. Through the expansion of transcriptional activating H3K36me2 and the suppression of repressive H3K27me3 marks, NSD2 activates an aberrant set of genes that contribute to myeloma growth, adhesive and invasive activities. NSD2 transcriptional activity also depends on its non-catalytic domains, which facilitate its recruitment to chromatin through histone binding. In this study, using NMR, ITC and molecular dynamics simulations, we show that the tandem PHD domain of NSD2 (PHDVC5HCHNSD2) is a combinatorial reader of unmodified histone H3K4 and tri-methylated H3K27 (H3K27me3). This is the first PHD tandem cassette known to decode the methylation status of H3K27. Importantly, in a NSD2-dependent MM cellular model, we show that expression of NSD2 mutants, engineered to disrupt the interaction between H3K27me3 and PHDVC5HCH, display in comparison to wild-type NSD2: incomplete loss of H3K27 methylation throughout the genome, decreased activation of adhesive properties and cell adhesion genes, and a decrease of the corresponding H3K27ac signal at promoters. Collectively, these data suggest that the PHDVC5HCH domain of NSD2 plays an important role in modulating gene expression and chromatin modification, providing new opportunities for pharmacological intervention.

Indexed as

Histone-Lysine N-MethyltransferaseHistonesMultiple MyelomaRepressor ProteinsCell AdhesionCell Line, TumorGene Expression Regulation, NeoplasticHumansMethylationMolecular Dynamics SimulationProtein DomainsTranscription, GeneticHistone-Lysine N-MethyltransferaseHistonesNSD2 protein, humanRepressor Proteins

Identifiers

PMID39656918
PMCPMC11724302

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.