Evidence map›Paper›PMID 39656677›Full record

ArticleNucleic acids research2025

ATAC and SAGA histone acetyltransferase modules facilitate transcription factor binding to nucleosomes independent of their acetylation activity.

Kristin V Chesnutt, Gizem Yayli, Christine Toelzer, Mylène Damilot, Khan Cox, Gunjan Gautam, Imre Berger, László Tora, Michael G Poirier

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kristin V ChesnuttOhio State Biochemistry Program, Ohio State University, 191 W. Woodruff Ave. Columbus, OH, 43210, USA.
Gizem YayliInstitut de Génétique et de Biologie Moléculaire et Cellulaire, 1 Rue Laurent Fries 67400 Illkirch, France.
Christine ToelzerSchool of Biochemistry, University of Bristol, 1 Tankard's Close, Bristol BS8 1TD, UK.ORCID 0000-0001-9984-5940
Mylène DamilotInstitut de Génétique et de Biologie Moléculaire et Cellulaire, 1 Rue Laurent Fries 67400 Illkirch, France.
Khan CoxDepartment of Physics, Ohio State University, 191 W. Woodruff Ave. Columbus, OH 43210, USA.
Gunjan GautamSchool of Biochemistry, University of Bristol, 1 Tankard's Close, Bristol BS8 1TD, UK.
Imre BergerSchool of Biochemistry, University of Bristol, 1 Tankard's Close, Bristol BS8 1TD, UK.ORCID 0000-0001-7518-9045
László ToraInstitut de Génétique et de Biologie Moléculaire et Cellulaire, 1 Rue Laurent Fries 67400 Illkirch, France.ORCID 0000-0001-7398-2250
Michael G PoirierOhio State Biochemistry Program, Ohio State University, 191 W. Woodruff Ave. Columbus, OH, 43210, USA.ORCID 0000-0002-1563-5792

Funding

Mechanisms of chromatin regulation of transcriptionR35GM139564 · NIGMS · OHIO STATE UNIVERSITY · PI POIRIER, MICHAEL GUY · 2021 to 2025
$3.6M
Molecular biophysics predoctoral training at the Ohio State UniversityT32GM144293 · NIGMS · OHIO STATE UNIVERSITY · PI CHARLES E BELL, Ralf A Bundschuh · 2022 to 2026
$1.1M
Agence Nationale de la Recherche ANR-19-CE11-0003-02L'École Universitaire de Recherche, Integrative Molecular and Cellular Biology ANR-17-EURE-0023Nancy Byrd Johnson and Howard M. Johnson Endowed FundNIGMS NIH HHS R35 GM139564NIGMS NIH HHS T32 GM144293NIH HHS R35 GM139564Structuration de la formation par la recherche dans les initiatives d'excellence, STRAT'US ANR-20-SFRI-0012Université de Strasbourg ANR-10-IDEX-0002Wellcome TrustWellcome Trust 106115/Z/14/Z
6 · The paper itself

Abstract

Transcription initiation involves the coordination of multiple events, starting with activators binding specific DNA target sequences, which recruit transcription coactivators to open chromatin and enable binding of general transcription factors and RNA polymerase II to promoters. Two key human transcriptional coactivator complexes, ATAC (ADA-two-A-containing) and SAGA (Spt-Ada-Gcn5 acetyltransferase), containing histone acetyltransferase (HAT) activity, target genomic loci to increase promoter accessibility. To better understand the function of ATAC and SAGA HAT complexes, we used in vitro biochemical and biophysical assays to characterize human ATAC and SAGA HAT module interactions with nucleosomes and how a transcription factor (TF) coordinates these interactions. We found that ATAC and SAGA HAT modules bind nucleosomes with high affinity, independent of their HAT activity and the tested TF. ATAC and SAGA HAT modules directly interact with the VP16 activator domain and this domain enhances acetylation activity of both HAT modules. Surprisingly, ATAC and SAGA HAT modules increase TF binding to its DNA target site within the nucleosome by an order of magnitude independent of histone acetylation. Altogether, our results reveal synergistic coordination between HAT modules and a TF, where ATAC and SAGA HAT modules (i) acetylate histones to open chromatin and (ii) facilitate TF targeting within nucleosomes independently of their acetylation activity.

Indexed as

Histone AcetyltransferasesNucleosomesTranscription FactorsAcetylationDNAHistonesHumansPromoter Regions, GeneticProtein BindingDNAHistone AcetyltransferasesHistonesNucleosomesTranscription Factors

Identifiers

PMID39656677
PMCPMC11724297

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.