Evidence map›Paper›PMID 39653039›Full record

ArticleThe plant genome2025

Mapping resistance to Sclerotinia white mold in two pinto bean recombinant inbred line populations.

Alvaro Soler-Garzón, Fernanda Souza Lopes, Jayanta Roy, Josh Clevenger, Zachary Myers, Walid Korani, Welison Andrade Pereira, Qijian Song, Timothy Porch, Phillip E McClean and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alvaro Soler-GarzónIrrigated Agriculture Research and Extension Center, Washington State University, Prosser, Washington, USA.ORCID https://orcid.org/0000-0002-3881-6502
Fernanda Souza LopesDepartment of Biology, Universidade Federal de Lavras, Lavras, Minas Gerais, Brazil.ORCID https://orcid.org/0000-0001-5723-8536
Jayanta RoyDepartment of Plant Sciences, North Dakota State University, Fargo, North Dakota, USA.ORCID https://orcid.org/0000-0003-3390-958X
Josh ClevengerHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Zachary MyersHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Walid KoraniHudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Welison Andrade PereiraDepartment of Biology, Universidade Federal de Lavras, Lavras, Minas Gerais, Brazil.
Qijian SongSoybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, USA.ORCID https://orcid.org/0000-0001-5103-4954
Timothy PorchUSDA-ARS, Tropical Agricultural Research Station, Mayagüez, Puerto Rico, USA.ORCID https://orcid.org/0000-0002-5107-2448
Phillip E McCleanDepartment of Plant Sciences, North Dakota State University, Fargo, North Dakota, USA.
Phillip N MiklasUSDA-ARS, Grain Legume Genetics and Physiology Research Unit, Prosser, Washington, USA.ORCID https://orcid.org/0000-0002-6636-454X

Funding

USDA-ARS through the National Sclerotinia Initiative
6 · The paper itself

Abstract

White mold, caused by the fungus Sclerotinia sclerotiorum (Lib.) de Bary, is a devastating disease affecting common bean (Phaseolus vulgaris L.) production worldwide. Breeding for resistance to white mold is challenging due to its quantitative inheritance and intricate genetic mechanisms. This research aimed to validate and characterize physiological resistance in the pinto dry bean market class through greenhouse straw tests under controlled conditions and field assessments under natural environments. Classical quantitative trait locus (QTL) mapping and Khufu de novo QTL-seq were employed to detect and narrow QTL intervals and identify candidate genes associated with white mold resistance in two pinto bean recombinant inbred line populations, PT9-5-6/USPT-WM-12 (P2) and PT12-37/VCP-13 (P3). Eleven QTL, five in P2 and six in P3, conditioning white mold resistance were identified. New QTL were discovered including WM1.4 and WM11.5 in P2, and WM1.5 and WM7.7 in P3. Existing major-effect QTL were validated: WM5.4 (34%-phenotypic variation explained) and WM7.4 (20%) in straw tests, and WM2.2 (15%) and WM3.1 (27%) under field conditions. QTL for avoidance traits such as resistance to lodging and late maturity overlapped WM2.2 in P2 and WM1.5, WM3.1, WM5.4, and WM7.7 in P3. WM5.4 (Pv05: 7.0-38.7 Mb) was associated with a large Phaseolus coccineus L. genome introgression in the resistant parent VCP-13. These findings offer narrowed genomic intervals and putative candidate genes for marker-assisted selection targeting white mold resistance improvement in pinto beans.

Indexed as

AscomycotaDisease ResistancePhaseolusPlant DiseasesChromosome MappingPhenotypePlant BreedingQuantitative Trait Loci

Identifiers

PMID39653039
PMCPMC11726412

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.