Evidence map›Paper›PMID 39652619›Full record

ArticlePLoS computational biology2024

Oscillatory dynamics of Rac1 activity in Dictyostelium discoideum amoebae.

Marko Šoštar, Maja Marinović, Vedrana Filić, Nenad Pavin, Igor Weber

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Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

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0cells of the map it votes in
4citing papers in PubMed
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1 · What the graph read from it

What it found

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Marko ŠoštarDivision of Molecular Biology, Ruđer Bošković Institute, Zagreb, Croatia.
Maja MarinovićDivision of Molecular Biology, Ruđer Bošković Institute, Zagreb, Croatia.
Vedrana FilićDivision of Molecular Biology, Ruđer Bošković Institute, Zagreb, Croatia.
Nenad PavinDepartment of Physics, Faculty of Science, University of Zagreb, Zagreb, Croatia.
Igor WeberDivision of Molecular Biology, Ruđer Bošković Institute, Zagreb, Croatia.ORCID 0000-0003-4296-3166

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small GTPases of the Rho family play a central role in the regulation of cell motility by controlling the remodeling of the actin cytoskeleton. In the amoeboid cells of Dictyostelium discoideum, the active form of the Rho GTPase Rac1 regulates actin polymerases at the leading edge and actin filament bundling proteins at the posterior cortex of polarized cells. We monitored the spatiotemporal dynamics of Rac1 and its effector DGAP1 in vegetative amoebae using specific fluorescent probes. We observed that plasma membrane domains enriched in active Rac1 not only exhibited stable polarization, but also showed rotations and oscillations, whereas DGAP1 was depleted from these regions. To simulate the observed dynamics of the two proteins, we developed a mass-conserving reaction-diffusion model based on the circulation of Rac1 between the membrane and the cytoplasm coupled with its activation by GEFs, deactivation by GAPs and interaction with DGAP1. Our theoretical model accurately reproduced the experimentally observed dynamic patterns, including the predominant anti-correlation between active Rac1 and DGAP1. Significantly, the model predicted a new colocalization regime of these two proteins in polarized cells, which we confirmed experimentally. In summary, our results improve the understanding of Rac1 dynamics and reveal how the occurrence and transitions between different regimes depend on biochemical reaction rates, protein levels and cell size. This study not only expands our knowledge of the behavior of Rac1 GTPases in D. discoideum amoebae but also demonstrates how specific modes of interaction between Rac1 and its effector DGAP1 lead to their counterintuitively anti-correlated dynamics.

Indexed as

DictyosteliumModels, Biologicalrac1 GTP-Binding ProteinCell MembraneCell PolarityComputational BiologyProtozoan ProteinsProtozoan Proteinsrac1 GTP-Binding Protein

Identifiers

PMID39652619
PMCPMC11658709

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.