Evidence map›Paper›PMID 39651271›Full record

ArticlebioRxiv : the preprint server for biology2025

Deciphering structural complexity of brain, joint, and muscle tissues using Fourier Ptychographic Scattered Light Microscopy.

Simon E van Staalduine, Vittorio Bianco, Pietro Ferraro, Miriam Menzel

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

4 authors.

Simon E van StaalduineDepartment of Imaging Physics, Faculty of Applied Sciences, Delft University of Technology, Delft, the Netherlands.ORCID 0000-0002-3558-7492
Vittorio BiancoInstitute of Applied Sciences and Intelligent Systems, Italian National Research Council, Pozzuoli (Napoli), Italy.ORCID 0000-0003-1956-4976
Pietro FerraroInstitute of Applied Sciences and Intelligent Systems, Italian National Research Council, Pozzuoli (Napoli), Italy.ORCID 0000-0002-0158-3856
Miriam MenzelDepartment of Imaging Physics, Faculty of Applied Sciences, Delft University of Technology, Delft, the Netherlands.ORCID 0000-0002-6042-7490

Funding

Vervet Research Colony as a Biomedical ResourceP40OD010965 · OD · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Matthew Jorgensen · 2012 to 2026
$14.6M
Postnatal Development of Cortical Receptors and White Matter TractsR01MH092311 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOODS, ROGER P · 2012 to 2016
$2.2M
NIH HHS P40 OD010965NIMH NIH HHS R01 MH092311
6 · The paper itself

Abstract

Fourier Ptychographic Microscopy (FPM) provides high-resolution imaging and morphological information over large fields of view, while Computational Scattered Light Imaging (ComSLI) excels at mapping interwoven fiber organization in unstained tissue sections. This study introduces Fourier Ptychographic Scattered Light Microscopy (FP-SLM), a new multi-modal approach that combines FPM and ComSLI analyses to create both high-resolution phase-contrast images and fiber orientation maps from a single dataset. The method is demonstrated on a state-of-the-art setup that was originally used for FPM and one that was originally used for ComSLI, and the outputs are quantitatively compared to each other on brain sections (frog, monkey) and sections from thigh muscle and knee (mouse). FP-SLM delivers high-resolution images while revealing fiber organization in nerve, muscle, tendon, cartilage, and bone tissues. The approach is validated by comparing the computed fiber orientations with those derived from structure tensor analysis of the high-resolution images. The comparison shows that FPM and ComSLI are compatible with each other and yield fully consistent results. Remarkably, this combination surpasses the sum of its parts, so that applying ComSLI analysis to FPM recordings and vice-versa outperforms both methods alone. FP-SLM can be retrospectively applied to analyze any existing dataset acquired from a setup that was originally built for FPM or ComSLI alone (consisting of LED array and low numerical aperture), without need to build or design an extra setup. This significantly expands the application range of both techniques and enhances the study of complex tissue architectures in biomedical research.

Indexed as

Biomedical ImagingFiber ArchitectureFourier PtychographyLight Scattering

Identifiers

PMID39651271
PMCPMC11623658

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.