Evidence map›Paper›PMID 39643609›Full record

ArticleNature communications2024

Coupling cellular drug-target engagement to downstream pharmacology with CeTEAM.

Nicholas C K Valerie, Kumar Sanjiv, Oliver Mortusewicz, Si Min Zhang, Seher Alam, Maria J Pires, Hannah Stigsdotter, Azita Rasti, Marie-France Langelier, Daniel Rehling and 14 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Nicholas C K ValerieScience for Life Laboratory, Division of Clinical Physiology, Department of Laboratory Medicine, Karolinska Institutet, Karolinska University Hospital, Huddinge, SE-141 52, Sweden. nicholas.valerie@ki.se.ORCID 0000-0002-9423-964X
Kumar SanjivScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Oliver MortusewiczScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.ORCID 0000-0002-4290-4994
Si Min ZhangScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.ORCID 0000-0001-7763-603X
Seher AlamScience for Life Laboratory, Division of Clinical Physiology, Department of Laboratory Medicine, Karolinska Institutet, Karolinska University Hospital, Huddinge, SE-141 52, Sweden.
Maria J PiresScience for Life Laboratory, Division of Clinical Physiology, Department of Laboratory Medicine, Karolinska Institutet, Karolinska University Hospital, Huddinge, SE-141 52, Sweden.
Hannah StigsdotterScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Azita RastiScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Marie-France LangelierDépartement de Biochimie and Médecine Moléculaire, Faculté de Médecine, Université de Montréal, Montréal, QC, H3C 3J7, Canada.ORCID 0000-0001-9815-1840
Daniel RehlingDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, SE-106 91, Sweden.
Adam ThroupScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.ORCID 0000-0001-6512-8679
Oryn Purewal-SidhuScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Matthieu DesrosesScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Jacob OniretiScience for Life Laboratory, Division of Clinical Physiology, Department of Laboratory Medicine, Karolinska Institutet, Karolinska University Hospital, Huddinge, SE-141 52, Sweden.ORCID 0009-0003-9745-4446
Prasad WakchaureScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Ingrid AlmlöfScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Johan BoströmScience for Life Laboratory, Division of Clinical Physiology, Department of Laboratory Medicine, Karolinska Institutet, Karolinska University Hospital, Huddinge, SE-141 52, Sweden.
Luka BevcScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Giorgia BenziScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Pål StenmarkDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, SE-106 91, Sweden.ORCID 0000-0003-4777-3417
John M PascalDépartement de Biochimie and Médecine Moléculaire, Faculté de Médecine, Université de Montréal, Montréal, QC, H3C 3J7, Canada.ORCID 0000-0002-2714-4317
Thomas HelledayScience for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.ORCID 0000-0002-7384-092X
Brent D G Page *Science for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Solna, SE-171 65, Sweden.
Mikael Altun *Science for Life Laboratory, Division of Clinical Physiology, Department of Laboratory Medicine, Karolinska Institutet, Karolinska University Hospital, Huddinge, SE-141 52, Sweden.ORCID 0000-0002-6937-6124

Funding

Barncancerfonden (Swedish Childhood Cancer Foundation) PR2016-0101Barncancerfonden (Swedish Childhood Cancer Foundation) TJ2019-0036Cancerfonden (Swedish Cancer Society) 201287Cancerfonden (Swedish Cancer Society) 21 0352 PTCancerfonden (Swedish Cancer Society) CAN2018/0658EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) CANCERPREV, 859860Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) BMA342854Karolinska Institutet (Karolinska Institute) 2018-01655Karolinska Institutet (Karolinska Institute) 2020-01685Karolinska Institutet (Karolinska Institute) 2022-01749Loo och Hans Ostermans Stiftelse för Medicinsk Forskning (Loo and Hans Osterman Foundation for Medical Research) 2020-01208Michael Smith Foundation for Health Research (MSFHR) 18292Novo Nordisk Fonden (Novo Nordisk Foundation) NNF22OC0076798Stiftelsen Felix Mindus Bidrag till Leukemiforskningen 2019-01992Svenska Sällskapet för Medicinsk Forskning (Swedish Society for Medical Research) S16-0152
6 · The paper itself

Abstract

Cellular target engagement technologies enable quantification of intracellular drug binding; however, simultaneous assessment of drug-associated phenotypes has proven challenging. Here, we present cellular target engagement by accumulation of mutant as a platform that can concomitantly evaluate drug-target interactions and phenotypic responses using conditionally stabilized drug biosensors. We observe that drug-responsive proteotypes are prevalent among reported mutants of known drug targets. Compatible mutants appear to follow structural and biophysical logic that permits intra-protein and paralogous expansion of the biosensor pool. We then apply our method to uncouple target engagement from divergent cellular activities of MutT homolog 1 (MTH1) inhibitors, dissect Nudix hydrolase 15 (NUDT15)-associated thiopurine metabolism with the R139C pharmacogenetic variant, and profile the dynamics of poly(ADP-ribose) polymerase 1/2 (PARP1/2) binding and DNA trapping by PARP inhibitors (PARPi). Further, PARP1-derived biosensors facilitated high-throughput screening for PARP1 binders, as well as multimodal ex vivo analysis and non-invasive tracking of PARPi binding in live animals. This approach can facilitate holistic assessment of drug-target engagement by bridging drug binding events and their biological consequences.

Indexed as

Poly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) Polymerase InhibitorsAnimalsBiosensing TechniquesDNA Repair EnzymesHEK293 CellsHigh-Throughput Screening AssaysHumansMiceMutationProtein BindingPyrophosphatasesDNA Repair EnzymesPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) Polymerase InhibitorsPyrophosphatases

Identifiers

PMID39643609
PMCPMC11624193

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.