Evidence map›Paper›PMID 39641322›Full record

ArticleAlzheimer's & dementia : the journal of the Alzheimer's Association2025

Single-microglia transcriptomic transition network-based prediction and real-world patient data validation identifies ketorolac as a repurposable drug for Alzheimer's disease.

Jielin Xu, Wenqiang Song, Zhenxing Xu, Michael M Danziger, Ehud Karavani, Chengxi Zang, Xin Chen, Yichen Li, Isabela M Rivera Paz, Dhruv Gohel and 11 more

Abstract read
In one paragraph

Article in Alzheimer's & dementia : the journal of the Alzheimer's Association, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Trial
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  6. A perspective: PLA2G4A as drug target for vascular inflammation in Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Review
  7. Article
  8. Review
  9. Network-based prediction and real-world patient data observation identify doxycycline as a repurposable drug in Alzheimer's disease.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2026
    Article
  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Jielin XuCleveland Clinic Genome Center, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Wenqiang SongCleveland Clinic Genome Center, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Zhenxing XuDepartment of Population Health Sciences, Weill Cornell Medicine, Cornell University, New York, New York, USA.
Michael M DanzigerAI for Accelerated Healthcare and Life Sciences Discovery, IBM Research-Israel, Haifa, Israel.ORCID 0000-0002-2674-0109
Ehud KaravaniAI for Accelerated Healthcare and Life Sciences Discovery, IBM Research-Israel, Haifa, Israel.ORCID 0000-0002-0187-5437
Chengxi ZangDepartment of Population Health Sciences, Weill Cornell Medicine, Cornell University, New York, New York, USA.ORCID 0000-0002-8244-9551
Xin ChenCleveland Clinic Genome Center, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Yichen LiCleveland Clinic Genome Center, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.ORCID 0000-0002-9079-104X
Isabela M Rivera PazGenomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.ORCID 0009-0009-9228-9270
Dhruv GohelCleveland Clinic Genome Center, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.ORCID 0000-0003-4978-6035
Chang SuDepartment of Population Health Sciences, Weill Cornell Medicine, Cornell University, New York, New York, USA.
Yadi ZhouCleveland Clinic Genome Center, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Yuan HouCleveland Clinic Genome Center, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Yishai ShimoniAI for Accelerated Healthcare and Life Sciences Discovery, IBM Research-Israel, Haifa, Israel.
Andrew A PieperBrain Health Medicines Center, Harrington Discovery Institute, University Hospitals Cleveland Medical Center, Cleveland, Ohio, USA.
Jianying HuIBM T.J. Watson Research Center, Yorktown Heights, New York, USA.
Fei WangDepartment of Population Health Sciences, Weill Cornell Medicine, Cornell University, New York, New York, USA.
Michal Rosen-ZviAI for Accelerated Healthcare and Life Sciences Discovery, IBM Research-Israel, Haifa, Israel.ORCID 0000-0001-7616-9724
James B LeverenzLou Ruvo Center for Brain Health, Neurological Institute, Cleveland Clinic, Cleveland, Ohio, USA.
Jeffrey CummingsChambers-Grundy Center for Transformative Neuroscience, Department of Brain Health, School of Integrated Health Sciences, University of Nevada Las Vegas, Las Vegas, Nevada, USA.
Feixiong ChengCleveland Clinic Genome Center, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio, USA.

Funding

National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
Trial-Ready Cohort for Preclinical/Prodromal Alzheimer's DiseaseR01AG053798 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AISEN, PAUL S., CUMMINGS, JEFFREY L. · 2017 to 2022
$39.4M
Translational and Therapeutics CoreP30AG072959 · NIA · CLEVELAND CLINIC LERNER COM-CWRU · PI Mark J Lowe · 2021 to 2026
$23.9M
Renewal of Centers of Biomedical Research Excellence (COBRE) (Phase 2) CNTN - ResubmissionP20GM109025 · NIGMS · CLEVELAND CLINIC FOUNDATION · PI JESSICA KIRKLAND CALDWELL · 2015 to 2026
$22.8M
Chronic Traumatic Encephalopathy: Detection, Diagnosis, Course, and Risk FactorsU01NS093334 · NINDS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CUMMINGS, JEFFREY L., REIMAN, ERIC MICHAEL · 2016 to 2022
$17.0M
Endophenotype Network-based Approaches to Prediction and Population-based Validation of In Silico Drug Repurposing for Alzheimer's DiseaseR01AG066707 · NIA · CLEVELAND CLINIC LERNER COM-CWRU · PI Feixiong Cheng · 2020 to 2026
$4.9M
TREM2 Genotype-Informed Drug Repurposing and Combination Therapy Design for Alzheimer’s DiseaseR01AG076448 · NIA · CLEVELAND CLINIC LERNER COM-CWRU · PI Feixiong Cheng, Li Gan · 2022 to 2026
$4.0M
Alzheimer's MultiOme Data Repurposing: Artificial Intelligence, Network Medicine, and Therapeutics DiscoveryU01AG073323 · NIA · CLEVELAND CLINIC LERNER COM-CWRU · PI BEKRIS, LYNN, CHENG, FEIXIONG · 2021 to 2025
$4.0M
Alzheimer's Clinical Trial InnOvatioN (ACTION) InitiativeR35AG071476 · NIA · UNIVERSITY OF NEVADA LAS VEGAS · PI CUMMINGS, JEFFREY L. · 2021 to 2025
$2.9M
Alzheimer's Disease and Related Dementia-like Sequelae of SARS-CoV-2 Infection: Virus-Host Interactome, Neuropathobiology, and Drug RepurposingRF1AG082211 · NIA · CLEVELAND CLINIC LERNER COM-CWRU · PI CHENG, FEIXIONG, PIEPER, ANDREW A · 2023 to 2023
$2.4M
Characterize neuronal and glial cell-specific vulnerability to proteinopathies in Alzheimer's disease using multimodal single-nuclei genomic and epigenomic approachesR01AG082118 · NIA · CLEVELAND CLINIC LERNER COM-CWRU · PI BONAKDARPOUR, BORNA, CHENG, FEIXIONG · 2023 to 2025
$2.4M
Dark GPCR signaling underlying the Microbiome-Gut-Brain Axis for Alzheimer's Disease and Related DementiaRF1NS133812 · NINDS · CLEVELAND CLINIC LERNER COM-CWRU · PI BROWN, JONATHAN MARK, CHENG, FEIXIONG · 2023 to 2023
$2.3M
Alzheimer's Association award ALZDISCOVERY-1051936Alzheimer's Disease Drug Discovery Foundation (ADDF)Cleveland Alzheimer's Disease Research Center (NIH/NIA) P30AG072959Keep Memory Alive (KMA)National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD) RF1AG048083-01National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD) U24 AG21886NIA NIH HHS K08 AG065463NIA NIH HHS P30 AG072959NIA NIH HHS R01 AG053798NIA NIH HHS R01AG053798NIA NIH HHS R01 AG066707NIA NIH HHS R01AG066707NIA NIH HHS R01 AG076448NIA NIH HHS R01AG076448NIA NIH HHS R01 AG082118NIA NIH HHS R01AG082118NIA NIH HHS R01 AG084250NIA NIH HHS R01AG084250NIA NIH HHS R21 AG083003NIA NIH HHS R21AG083003NIA NIH HHS R35 AG071476NIA NIH HHS R35AG071476NIA NIH HHS R56 AG057478NIA NIH HHS R56 AG074001NIA NIH HHS R56AG074001NIA NIH HHS RF1 AG048083NIA NIH HHS RF1 AG082211NIA NIH HHS RF1AG082211NIA NIH HHS U01 AG073323NIA NIH HHS U01AG073323NIA NIH HHS U24 AG021886NIGMS NIH HHS P20 GM109025NIGMS NIH HHS P20GM109025NINDS NIH HHS RF1 NS133812NINDS NIH HHS RF1NS133812NINDS NIH HHS U01 NS093334NINDS NIH HHS U01NS093334
6 · The paper itself

Abstract

introductionHigh microglial heterogeneities hinder the development of microglia-targeted treatment for Alzheimer's disease (AD).

methodsWe integrated 0.7 million single-nuclei RNA-sequencing transcriptomes from human brains using a variational autoencoder. We predicted AD-relevant microglial subtype-specific transition networks for disease-associated microglia (DAM), tau microglia, and neuroinflammation-like microglia (NIM). We prioritized drugs by specifically targeting microglia-specific transition networks and validated drugs using two independent real-world patient databases.

resultsWe identified putative AD molecular drivers (e.g., SYK, CTSB, and INPP5D) in transition networks of DAM and NIM. Via specifically targeting NIM, we identified that usage of ketorolac was associated with reduced AD incidence in both MarketScan (hazard ratio [HR] = 0.89) and INSIGHT (HR = 0.83) Clinical Research Network databases, mechanistically supported by ketorolac-treated transcriptomic data from AD patient induced pluripotent stem cell-derived microglia. DISCUSSION: This study offers insights into the pathobiology of AD-relevant microglial subtypes and identifies ketorolac as a potential anti-inflammatory treatment for AD. HIGHLIGHTS: An integrative analysis of ≈ 0.7 million single-nuclei RNA-sequencing transcriptomes from human brains identified Alzheimer's disease (AD)-relevant microglia subtypes. Network-based analysis identified putative molecular drivers (e.g., SYK, CTSB, INPP5D) of transition networks between disease-associated microglia (DAM) and neuroinflammation-like microglia (NIM). Via network-based prediction and population-based validation, we identified that usage of ketorolac (a US Food and Drug Administration-approved anti-inflammatory medicine) was associated with reduced AD incidence in two independent patient databases. Mechanistic observation showed that ketorolac treatment downregulated the Type-I interferon signaling in patient induced pluripotent stem cell-derived microglia, mechanistically supporting its protective effects in real-world patient databases.

Indexed as

Alzheimer DiseaseAnti-Inflammatory Agents, Non-SteroidalDrug RepositioningKetorolacMicrogliaTranscriptomeBrainHumansAnti-Inflammatory Agents, Non-SteroidalKetorolacAlzheimer's diseasedisease‐associate microgliadrug repurposingketorolac molecular driverneuroinflammation‐like microgliaprotein–protein interactome

Identifiers

PMID39641322
PMCPMC11782846

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.