Evidence map›Paper›PMID 39640229›Full record

ArticleOptica2023

Label- and slide-free tissue histology using 3D epi-mode quantitative phase imaging and virtual hematoxylin and eosin staining.

Tanishq Mathew Abraham, Paloma Casteleiro Costa, Caroline Filan, Zhe Guang, Zhaobin Zhang, Stewart Neill, Jeffrey J Olson, Richard Levenson, Francisco E Robles

Abstract read
In one paragraph

Article in Optica, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Qualitative and quantitative assessment ofBiomedical optics express · 2026
    Article
  5. Quantitative Stain Mapping in X-Ray Virtual Histology.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Tanishq Mathew AbrahamDepartment of Biomedical Engineering, University of California, Davis, California 95616, USA.
Paloma Casteleiro CostaSchool of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.ORCID 0000-0002-7824-9805
Caroline FilanGeorge W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.ORCID 0000-0002-6512-5977
Zhe GuangWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.ORCID 0000-0002-0500-8437
Zhaobin ZhangWinship Cancer Institute, Emory University, Atlanta, Georgia 30332, USA.
Stewart NeillWinship Cancer Institute, Emory University, Atlanta, Georgia 30332, USA.
Jeffrey J OlsonWinship Cancer Institute, Emory University, Atlanta, Georgia 30332, USA.
Richard LevensonDepartment of Pathology and Laboratory Medicine, UC Davis Health, Sacramento, California 95817, USA.
Francisco E RoblesWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA.ORCID 0000-0003-4413-9779

Funding

3D Microscopy with Ultraviolet Surface Excitation (3D-MUSE)R01EB028635 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI LEVENSON, RICHARD M., WILSON, DAVID LYNN · 2019 to 2023
$2.7M
Accessible label-free optical microscopy with quantitative molecular and functional contrastR35GM147437 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Francisco E Robles · 2022 to 2026
$1.9M
Imaging and informatics techniques to spatially map tumor-associated collagen: novel cancer diagnostic tools (2 of 2)R33CA202881 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEVENSON, RICHARD M. · 2017 to 2019
$1.3M
Stimulated Raman scattering spectroscopic optical coherence tomography (SRS-SOCT) for label-free molecular imaging of brain tumor pathologyR21CA223853 · NCI · GEORGIA INSTITUTE OF TECHNOLOGY · PI ROBLES, FRANCISCO E · 2018 to 2020
$606k
NCI NIH HHS R21 CA223853NCI NIH HHS R33 CA202881NIBIB NIH HHS R01 EB028635NIGMS NIH HHS R35 GM147437
6 · The paper itself

Abstract

Histological staining of tissue biopsies, especially hematoxylin and eosin (H&E) staining, serves as the benchmark for disease diagnosis and comprehensive clinical assessment of tissue. However, the typical formalin-fixation, paraffin-embedding (FFPE) process is laborious and time consuming, often limiting its usage in time-sensitive applications such as surgical margin assessment. To address these challenges, we combine an emerging 3D quantitative phase imaging technology, termed quantitative oblique back illumination microscopy (qOBM), with an unsupervised generative adversarial network pipeline to map qOBM phase images of unaltered thick tissues (i.e., label- and slide-free) to virtually stained H&E-like (vH&E) images. We demonstrate that the approach achieves high-fidelity conversions to H&E with subcellular detail using fresh tissue specimens from mouse liver, rat gliosarcoma, and human gliomas. We also show that the framework directly enables additional capabilities such as H&E-like contrast for volumetric imaging. The quality and fidelity of the vH&E images are validated using both a neural network classifier trained on real H&E images and tested on virtual H&E images, and a user study with neuropathologists. Given its simple and low-cost embodiment and ability to provide real-time feedback

Identifiers

PMID39640229
PMCPMC11620277

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.