Evidence map›Paper›PMID 39639114›Full record

ArticleCommunications biology2024

Dominance of recombinant DWV genomes with changing viral landscapes as revealed in national US honey bee and varroa mite survey.

Poppy J Hesketh-Best, Dean A Mckeown, Krisztina Christmon, Steven Cook, Anne Marie Fauvel, Nathalie A Steinhauer, Declan C Schroeder

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Poppy J Hesketh-BestDepartment of Veterinary Population Medicine, University of Minnesota, St. Paul, MN, USA.ORCID 0000-0002-0284-6689
Dean A MckeownDepartment of Veterinary Population Medicine, University of Minnesota, St. Paul, MN, USA.
Krisztina ChristmonBee Informed Partnership, College Park, MD, USA.ORCID 0000-0001-7369-5892
Steven CookUSDA-ARS Bee Research Laboratory, Beltsville, MD, USA.
Anne Marie FauvelBee Informed Partnership, College Park, MD, USA.
Nathalie A SteinhauerBee Informed Partnership, College Park, MD, USA.ORCID 0000-0003-2215-517X
Declan C SchroederDepartment of Veterinary Population Medicine, University of Minnesota, St. Paul, MN, USA. dcschroe@umn.edu.ORCID 0000-0001-5991-2838

Funding

United States Department of Agriculture | Animal and Plant Health Inspection Service (APHIS) AP22PPQSUnited States Department of Agriculture | Animal and Plant Health Inspection Service (APHIS) T00C042
6 · The paper itself

Abstract

Honey bees are essential pollinators for global agriculture. The viromes of US commercial apiaries and their ectoparasitic mites are poorly characterized at a strain level and there is a need to integrate genomics into pathogen surveillance. We sequenced RNA viromes from 383 adult bees and 173 mites pooled samples from 11 major US beekeeping hubs in 2021, assembling 45 complete and 1702 partial genomes. Protein sequence similarity networks and recombinant genome identification revealed a new viral landscape. Sinaivirus (n = 312), Iflavirus sacbroodi (n = 280), and Iflavirus aladeformis (DWV, n = 135) genomes were common. Recombinant DWV genomes with high nucleotide identity were widespread, and DWV type A master variants were rare, with an indication that RT-PCR surveillance may over-detect type A due to the prevalence of recombinant DWV genomes. Future work should use genomic strategies to avoid misidentification of common honey bee virus genomes and their impact on colony health.

Indexed as

Genome, ViralVarroidaeAnimalsBeekeepingBeesPhylogenyRecombination, GeneticRNA, ViralRNA VirusesUnited StatesViromeRNA, Viral

Identifiers

PMID39639114
PMCPMC11621700

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.