Evidence map›Paper›PMID 39636880›Full record

ArticlePloS one2024

An interpretable framework for inter-observer agreement measurements in TILs scoring on histopathological breast images: A proof-of-principle study.

Abdulkerim Capar, Dursun Ali Ekinci, Mucahit Ertano, M Khalid Khan Niazi, Erva Bengu Balaban, Ibrahim Aloglu, Meryem Dogan, Ziyu Su, Fugen Vardar Aker, Metin Nafi Gurcan

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Abdulkerim CaparCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, North Carolina, United States of America.ORCID 0000-0002-7110-5569
Dursun Ali EkinciInformatics Institute, Istanbul Technical University, Istanbul, Turkiye.
Mucahit ErtanoInformatics Institute, Istanbul Technical University, Istanbul, Turkiye.ORCID 0009-0002-5500-4255
M Khalid Khan NiaziCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, North Carolina, United States of America.
Erva Bengu BalabanDepartment of Pathology, Haydarpasa Numune Education and Research Hospital, University of Health Sciences, Istanbul, Turkiye.
Ibrahim AlogluDepartment of Pathology, Haydarpasa Numune Education and Research Hospital, University of Health Sciences, Istanbul, Turkiye.
Meryem DoganDepartment of Pathology, Haydarpasa Numune Education and Research Hospital, University of Health Sciences, Istanbul, Turkiye.
Ziyu SuCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, North Carolina, United States of America.ORCID 0000-0001-9600-3078
Fugen Vardar AkerDepartment of Pathology, Haydarpasa Numune Education and Research Hospital, University of Health Sciences, Istanbul, Turkiye.
Metin Nafi GurcanCenter for Artificial Intelligence Research, Wake Forest University School of Medicine, Winston-Salem, North Carolina, United States of America.

Funding

Computer-assisted diagnosis of ear pathologies by combining digital otoscopy with complementary data using machine learningR01DC020715 · NIDCD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Metin Nafi Gurcan, Aaron C Moberly · 2023 to 2026
$2.5M
Culturally Augmented Learning In Biomedical Informatics Research (CALIBIR) ProgramR25LM014214 · NLM · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Metin Nafi Gurcan, AREZOO MOVAGHAR · 2022 to 2026
$671k
Efficient and cost-effective breast cancer risk stratification using whole slide histopathology imagesR21CA273665 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI GURCAN, METIN NAFI · 2023 to 2024
$394k
NCI NIH HHS R21 CA273665NIDCD NIH HHS R01 DC020715NLM NIH HHS R25 LM014214
6 · The paper itself

Abstract

Breast cancer, a widespread and life-threatening disease, necessitates precise diagnostic tools for improved patient outcomes. Tumor-Infiltrating Lymphocytes (TILs), reflective of the immune response against cancer cells, are pivotal in understanding breast cancer behavior. However, inter-observer variability in TILs scoring methods poses challenges to reliable assessments. This study introduces a novel and interpretable proof-of-principle framework comprising two innovative inter-observer agreement measures. The first method, Boundary-Weighted Fleiss' Kappa (BWFK), addresses tissue segmentation predictions, focusing on mitigating disagreements along tissue boundaries. BWFK enhances the accuracy of stromal segmentation, providing a nuanced assessment of inter-observer agreement. The second proposed method, the Distance Based Cell Agreement Algorithm (DBCAA), eliminates the need for ground truth annotations in cell detection predictions. This innovative approach offers versatility across histopathological analyses, overcoming data availability challenges. Both methods were applied to assess inter-observer agreement using a clinical image dataset consisting of 25 images of invasive ductal breast carcinoma tissue, each annotated by four pathologists, serving as a proof-of-principle. Experimental investigations demonstrated that the BWFK method yielded gains of up to 32% compared to the standard Fleiss' Kappa model. Furthermore, a procedure for conducting clinical validations of artificial intelligence (AI) based cell detection methods was elucidated. Thoroughly validated on a clinical dataset, the framework contributes to standardized, reliable, and interpretable inter-observer agreement assessments. This study is the first examination of inter-observer agreements in stromal segmentation and lymphocyte detection for the TILs scoring problem. The study emphasizes the potential impact of these measures in advancing histopathological image analysis, fostering consensus in TILs scoring, and ultimately improving breast cancer diagnostics and treatment planning. The source code and implementation guide for this study are accessible on our GitHub page, and the full clinical dataset is available for academic and research purposes on Kaggle.

Indexed as

AlgorithmsBreast NeoplasmsLymphocytes, Tumor-InfiltratingObserver VariationBreastCarcinoma, Ductal, BreastFemaleHumansImage Processing, Computer-Assisted

Identifiers

PMID39636880
PMCPMC11620390

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.