Evidence map›Paper›PMID 39633505›Full record

ArticleBreast cancer research : BCR2024

Image analysis-based identification of high risk ER-positive, HER2-negative breast cancers.

Dong Neuck Lee, Yao Li, Linnea T Olsson, Alina M Hamilton, Benjamin C Calhoun, Katherine A Hoadley, J S Marron, Melissa A Troester

Abstract read
In one paragraph

Article in Breast cancer research : BCR, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dong Neuck LeeDepartment of Biostatistics, University of North Carolina, Chapel Hill, NC, USA.
Yao LiDepartment of Statistics and Operations Research, University of North Carolina, Chapel Hill, NC, USA.
Linnea T OlssonDepartment of Epidemiology, University of North Carolina, Chapel Hill, NC, USA.
Alina M HamiltonLineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA.
Benjamin C CalhounDepartment of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA.
Katherine A HoadleyDepartment of Genetics, University of North Carolina, Chapel Hill, NC, USA.
J S MarronDepartment of Statistics and Operations Research, University of North Carolina, Chapel Hill, NC, USA. marron@unc.edu.
Melissa A TroesterDepartment of Epidemiology, University of North Carolina, Chapel Hill, NC, USA. troester@unc.edu.

Funding

UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Stephanie Engel · 2001 to 2026
$36.3M
Cancer Control Education ProgramT32CA057726 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa B Gilkey, Melissa A. Troester · 2017 to 2026
$3.7M
P53, DNA Repair Imbalance, and Immune Response in Breast Cancer Mortality DisparitiesR01CA253450 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY, Melissa A. Troester · 2021 to 2026
$3.6M
Cancer Health Disparities Training ProgramT32CA128582 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SMITH, JENNIFER SUSAN, TATE, DEBORAH F. · 2009 to 2023
$3.4M
NCI NIH HHS R01 CA253450NCI NIH HHS T32 CA057726NCI NIH HHS T32 CA128582NIEHS NIH HHS P30 ES010126
6 · The paper itself

Abstract

backgroundBreast cancer subtypes Luminal A and Luminal B are classified by the expression of PAM50 genes and may benefit from different treatment strategies. Machine learning models based on H&E images may contain features associated with subtype, allowing early identification of tumors with higher risk of recurrence.

methodsH&E images (n = 630 ER+/HER2-breast cancers) were pixel-level segmented into epithelium and stroma. Convolutional neural network and multiple instance learning were used to extract image features from original and segmented images. Patient-level classification models were trained to discriminate Luminal A versus B image features in tenfold cross-validation, with or without grade adjustment. The best-performing visual classifier was incorporated into envisioned diagnostic protocols as an alternative to genomic testing (PAM50). The protocols were then compared in time-to-recurrence models.

resultsAmong ER+/HER2-tumors, the image-based protocol differentiated recurrence times with a hazard ratio (HR) of 2.81 (95% CI: 1.73-4.56), which was similar to the HR for PAM50 (2.66, 95% CI: 1.65-4.28). Grade adjustment did not improve subtype prediction accuracy, but did help balance sensitivity and specificity. Among high grade participants, sensitivity and specificity (0.734 and 0.474, respectively) became more similar (0.732 and 0.624, respectively) in grade-adjusted models. The original and epithelium-specific images had similar performance and highest accuracy, followed by stroma or binarized images showing only the epithelial-stromal interface.

conclusionsGiven low rates of genomic testing uptake nationally, image-based methods may help identify ER+/HER2-patients who could benefit from testing.

Indexed as

Biomarkers, TumorBreast NeoplasmsErb-b2 Receptor Tyrosine KinasesReceptors, EstrogenFemaleHumansImage Processing, Computer-AssistedMachine LearningMiddle AgedNeoplasm Recurrence, LocalNeural Networks, ComputerPrognosisBiomarkers, TumorERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesReceptors, EstrogenBreast cancerCBCS3Distance weighted learningHistologyImage segmentationMultiple instance learning

Identifiers

PMID39633505
PMCPMC11616316

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.