Evidence map›Paper›PMID 39632925›Full record

ArticleNature communications2024

A 'through-DNA' mechanism for co-regulation of metal uptake and efflux.

Udit Kumar Chakraborty, Youngchan Park, Kushal Sengupta, Won Jung, Chandra P Joshi, Danielle H Francis, Peng Chen

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Microbial metal physiology: ions to ecosystems.Nature reviews. Microbiology · 2025
    Review
  2. Bacteria Under Metal Stress-Molecular Mechanisms of Metal Tolerance.International journal of molecular sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Udit Kumar Chakraborty *Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.ORCID 0009-0006-2935-3231
Youngchan Park *Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-0681-6487
Kushal SenguptaDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-5941-406X
Won JungDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Chandra P JoshiDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Danielle H FrancisDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.
Peng ChenDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA. pc252@cornell.edu.ORCID 0000-0001-8582-7661

Funding

Unusual mechanisms of metal regulation in bacteria: from single molecules to single cells to cell communitiesR01GM109993 · NIGMS · CORNELL UNIVERSITY · PI Peng Chen · 2014 to 2026
$3.9M
NIGMS NIH HHS R01 GM109993U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM109993
6 · The paper itself

Abstract

Transition metals like Zn are essential for all organisms including bacteria, but fluctuations of their concentrations in the cell can be lethal. Organisms have thus evolved complex mechanisms for cellular metal homeostasis. One mechanistic paradigm involves pairs of transcription regulators sensing intracellular metal concentrations to regulate metal uptake and efflux. Here we report that Zur and ZntR, a prototypical pair of regulators for Zn uptake and efflux in E. coli, respectively, can coordinate their regulation through DNA, besides sensing cellular Zn

Indexed as

DNA, BacterialEscherichia coliEscherichia coli ProteinsZincBacterial ProteinsDNADNA-Binding ProteinsFluorescence Resonance Energy TransferGene Expression Regulation, BacterialKineticsProtein BindingRepressor ProteinsSingle Molecule ImagingBacterial ProteinsDNADNA, BacterialDNA-Binding ProteinsEscherichia coli ProteinsRepressor ProteinsZinc

Identifiers

PMID39632925
PMCPMC11618457

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.