Evidence map›Paper›PMID 39629213›Full record

ArticleFrontiers in microbiology2024

Metagenomics insights into bacterial diversity and antibiotic resistome of the sewage in the city of Belém, Pará, Brazil.

Sérgio Ramos, Edivaldo Júnior, Oscar Alegria, Elianne Vieira, Sandro Patroca, Ana Cecília, Fabiano Moreira, Adriana Nunes

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sérgio RamosLaboratory of Genomics and Bioinformatics, Center of Genomics and Systems Biology, Federal University of Pará, Belém, Brazil.
Edivaldo JúniorLaboratory of Leishmaniasis, Parasitology Section, Evandro Chagas Institute, Ananindeua, Brazil.
Oscar AlegriaLaboratory of Genomics and Bioinformatics, Center of Genomics and Systems Biology, Federal University of Pará, Belém, Brazil.
Elianne VieiraLaboratory of Genomics and Bioinformatics, Center of Genomics and Systems Biology, Federal University of Pará, Belém, Brazil.
Sandro PatrocaArbovirology and Hemorrhagic Fevers Section, Evandro Chagas Institute, Ananindeua, Brazil.
Ana CecíliaArbovirology and Hemorrhagic Fevers Section, Evandro Chagas Institute, Ananindeua, Brazil.
Fabiano MoreiraOncology Research Center, João de Barros Barreto Hospital, Federal University of Pará, Belém, Brazil.
Adriana NunesLaboratory of Genomics and Bioinformatics, Center of Genomics and Systems Biology, Federal University of Pará, Belém, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: The advancement of antimicrobial resistance is a significant public health issue today. With the spread of resistant bacterial strains in water resources, especially in urban sewage, metagenomic studies enable the investigation of the microbial composition and resistance genes present in these locations. This study characterized the bacterial community and antibiotic resistance genes in a sewage system that receives effluents from various sources through metagenomics. Methods: One liter of surface water was collected at four points of a sewage channel, and after filtration, the total DNA was extracted and then sequenced on an NGS platform (Illumina® NextSeq). The sequenced data were trimmed, and the microbiome was predicted using the Kraken software, while the resistome was analyzed on the CARD webserver. All ecological and statistical analyses were performed using the. RStudio tool. Results and discussion: The complete metagenome results showed a community with high diversity at the beginning and more restricted diversity at the end of the sampling, with a predominance of the phyla Bacteroidetes, Actinobacteria, Firmicutes, and Proteobacteria. Most species were considered pathogenic, with an emphasis on those belonging to the

Indexed as

antibiotic resistant bacteriametagenomemicrobial diversityresistomesewerage

Identifiers

PMID39629213
PMCPMC11611572

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.