Evidence map›Paper›PMID 39628979›Full record

ArticleInternational journal of general medicine2024

Identification of Biomarkers Associated with Oxidative Stress in Aortic Dissection Based on Bulk Transcriptome Analyses.

Zhenghao Li, Changying Li, Yue Shao, Haoyu Ran, Haoming Shi, Ruiqin Zhou, Xuanyu Liu, Qingchen Wu, Cheng Zhang

Abstract read
In one paragraph

Article in International journal of general medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Zhenghao Li *Department of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.ORCID 0009-0007-9423-9096
Changying Li *Department of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.
Yue ShaoDepartment of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.ORCID 0000-0001-8674-2782
Haoyu RanDepartment of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.
Haoming ShiDepartment of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.
Ruiqin ZhouDepartment of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.
Xuanyu LiuDepartment of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.
Qingchen WuDepartment of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.
Cheng ZhangDepartment of Cardiothoracic Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, People's Republic of China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: The aim of this study is to investigate the underlying molecular mechanism of oxidative stress (OS) involved in aortic dissection (AD). Methods: Datasets of AD and OS-related genes were obtained from the Gene Expression Omnibus (GEO) and the GeneCards database, respectively. Differential expression analysis and weighted gene correlation network analysis (WGCNA) were employed to screen genes. After enrichment analysis, a protein-protein interaction (PPI) network was constructed, and machine learning algorithms were used to determine signature genes. Comprehensive bioinformatics analyses on the signature genes were executed, and a clinical prediction model was established and evaluated. External datasets, in vitro experiment, and Mendelian randomization (MR) analysis were applied to validation. Results: We identified CCL2, ITGB4, MYC, SOCS3, SPP1 and TEK as OS-related signature genes in AD. The area under the ROC curve of all the signature genes was greater than 0.75. The clinical prediction model based on the signature genes showed satisfactory diagnostic efficacy in both training and validation cohorts. In validation cohort and in vitro experiment, CCL2, MYC, SPP1 and TEK were further validated. However, the MR results showed no causal association between the expression of the signature genes and AD. Conclusion: This study demonstrated that OS participates in and affects the progression of AD. Six biomarkers associated with OS could be perceived as crucial targets for the diagnosis and treatment of AD.

Indexed as

aortic dissectionbioinformatics analysisexpression quantitative trait locusmachine learningMendelian randomization

Identifiers

PMID39628979
PMCPMC11611705

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