Evidence map›Paper›PMID 39628860›Full record

ArticleJournal of applied statistics2024

Urinary volatile organic compounds (VOCs) based prostate cancer diagnosis via high-dimensional classification.

George Ekow Quaye, Wen-Yee Lee, Elizabeth Noriega Landa, Sabur Badmos, Kiana L Holbrook, Xiaogang Su

Abstract read
In one paragraph

Article in Journal of applied statistics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

George Ekow QuayeDepartment of Mathematical Sciences, University of Texas at El Paso, El Paso, TX, USA.
Wen-Yee LeeDepartment of Chemistry and Biochemistry, University of Texas at El Paso, El Paso, TX, USA.
Elizabeth Noriega LandaDepartment of Chemistry and Biochemistry, University of Texas at El Paso, El Paso, TX, USA.
Sabur BadmosDepartment of Chemistry and Biochemistry, University of Texas at El Paso, El Paso, TX, USA.
Kiana L HolbrookDepartment of Chemistry and Biochemistry, University of Texas at El Paso, El Paso, TX, USA.
Xiaogang SuDepartment of Mathematical Sciences, University of Texas at El Paso, El Paso, TX, USA.ORCID https://orcid.org/0000-0002-9642-9412

Funding

UTEP Border Biomedical Research CenterU54MD007592 · NIMHD · UNIVERSITY OF TEXAS EL PASO · PI Yong Qin · 2019 to 2026
$35.1M
G-RISE at the University of Texas at El PasoT32GM144919 · NIGMS · UNIVERSITY OF TEXAS EL PASO · PI AGUILERA, RENATO J · 2022 to 2024
$1.5M
Urinary biomarkers for prostate cancer diagnosis and risk assessmentSC1CA245675 · NCI · UNIVERSITY OF TEXAS EL PASO · PI LEE, WEN-YEE · 2019 to 2023
$1.5M
NCI NIH HHS SC1 CA245675NIGMS NIH HHS T32 GM144919NIMHD NIH HHS U54 MD007592
6 · The paper itself

Abstract

Early detection of prostate cancer is critical for successful treatment and survival. However, current diagnostic methods such as prostate-specific antigen (PSA) testing and digital rectal examination (DRE) have limitations in accuracy, specificity, and sensitivity. Recent research suggests that urinary volatile organic compounds (VOCs) could serve as potential biomarkers for prostate cancer diagnosis. In this study, urine samples from 337 PCa-positive and 233 PCa-negative patients were collected to develop a diagnosis model. The study involves a high dimensional (HD) classification problem due to the vast number of measured VOCs. Our findings reveal that regularized logistic regression outperforms numerous other classifiers when analyzing the collected data. In particular, we have selected a regularized logistic model with the SCAD (smoothly clipped absolute deviation) penalty as the final model, which attains an AUC (area under the ROC curve) of 0.748, in contrast to a PSA-based AUC of 0.540. These results underscore the potential of VOC-based diagnosis as a clinically feasible approach for PCa screening.

Indexed as

Classificationhigh dimensional (HD) modelingPLS-DAprostate cancer screening and diagnosisregularized logistic regressionvolatile organic compounds (VOC)

Identifiers

PMID39628860
PMCPMC11610231

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.