Evidence map›Paper›PMID 39628660›Full record

ArticleProceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management2024

scACT: Accurate Cross-modality Translation via Cycle-consistent Training from Unpaired Single-cell Data.

Siwei Xu, Junhao Liu, Jing Zhang

Abstract read
In one paragraph

Article in Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Deep learning for psychiatric genomics: from tools to applications.Current opinion in genetics & development · 2026
    Review
  2. Article
  3. Identifying Combinatorial Regulatory Genes for Cell Fate Decision via Reparameterizable Subset Explanations.KDD : proceedings. International Conference on Knowledge Discovery & Data Mining · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Siwei XuUniversity of California, Irvine, Irvine, California, USA.
Junhao LiuUniversity of California, Irvine, Irvine, California, USA.
Jing ZhangUniversity of California, Irvine, Irvine, California, USA.

Funding

Interpretable Deep Learning Methods to Investigate Genetics and Epigenetics of Alzheimer's Disease at a Single-Cell ResolutionR01NS128523 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI JING ZHANG · 2022 to 2026
$3.2M
Decoding the Noncoding Regulatory Genome with Super-resolution via Single-cell Multiomics IntegrationR01HG012572 · NHGRI · UNIVERSITY OF CALIFORNIA-IRVINE · PI JING ZHANG · 2022 to 2026
$2.0M
NHGRI NIH HHS R01 HG012572NINDS NIH HHS R01 NS128523
6 · The paper itself

Abstract

Single-cell sequencing technologies have revolutionized genomics by enabling the simultaneous profiling of various molecular modalities within individual cells. Their integration, especially cross-modality translation, offers deep insights into cellular regulatory mechanisms. Many methods have been developed for cross-modality translation, but their reliance on scarce high-quality co-assay data limits their applicability. Addressing this, we introduce scACT, a deep generative model designed to extract cross-modality biological insights from unpaired single-cell data. scACT tackles three major challenges: aligning unpaired multi-modal data via adversarial training, facilitating cross-modality translation without prior knowledge via cycle-consistent training, and enabling interpretable regulatory interconnections explorations via in-silico perturbations. To test its performance, we applied scACT on diverse single-cell datasets and found it outperformed existing methods in all three tasks. Finally, we have developed scACT as an individual open-source software package to advance single-cell omics data processing and analysis within the research community.

Indexed as

Cross-modality TranslationCycle-consistent Adversarial TrainingModel InterpretabilityMultimodal IntegrationSingle-cell ATAC-seqSingle-cell RNA-seq

Identifiers

PMID39628660
PMCPMC11611688

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.