Evidence map›Paper›PMID 39628086›Full record

ArticleEnvironmental and molecular mutagenesis2025

Evaluation of the standard battery of in vitro genotoxicity tests to predict in vivo genotoxicity through mathematical modeling: A report from the 8th International Workshop on Genotoxicity Testing.

Mirjam Luijten, Jan van Benthem, Takeshi Morita, Raffaella Corvi, Patricia A Escobar, Yurika Fujita, Jennifer Hemmerich, Naveed Honarvar, David Kirkland, Naoki Koyama and 6 more

Abstract read
In one paragraph

Article in Environmental and molecular mutagenesis, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Mirjam LuijtenCentre for Health Protection, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.ORCID 0000-0002-5277-1443
Jan van BenthemCentre for Health Protection, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Takeshi MoritaNational Institute of Technology and Evaluation, Tokyo, Japan.
Raffaella CorviEuropean Commission, Joint Research Centre (JRC), Ispra, Italy.
Patricia A EscobarMerck & Co., Inc., Rahway, New Jersey, USA.
Yurika FujitaInstitute for Protein Research, Osaka University, Osaka, Japan.
Jennifer HemmerichBASF SE, Ludwigshafen, Germany.ORCID 0000-0003-0372-8956
Naveed HonarvarBASF SE, Ludwigshafen, Germany.
David KirklandKirkland Consulting, Tadcaster, UK.
Naoki KoyamaChugai Pharmaceutical Co., Ltd., Translational Research Division, Yokohama, Japan.
David P LovellCity St George's, University of London, London, UK.
Miriam MatheaBASF SE, Ludwigshafen, Germany.ORCID 0000-0002-3214-1487
Andrew WilliamsHealth Canada, Ottawa, Canada.
Stephen DertingerLitron Laboratories, Rochester, New York, USA.
Stefan PfuhlerProcter & Gamble, Mason, Ohio, USA.ORCID 0000-0001-8869-5975
Jeroen L A PenningsCentre for Health Protection, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.ORCID 0000-0002-9188-6358

Funding

Ministerie van Landbouw, Natuur en VoedselkwaliteitMinisterie van Volksgezondheid, Welzijn en Sport
6 · The paper itself

Abstract

In human health risk assessment of chemicals and pharmaceuticals, identification of genotoxicity hazard usually starts with a standard battery of in vitro genotoxicity tests, which is needed to cover all genotoxicity endpoints. The individual tests included in the battery are not designed to pick up all endpoints. This explains why resulting data can appear contradictory, thereby complicating accurate interpretation of the findings. Such interpretation could be improved through application of mathematical modeling. One of the advantages of mathematical modeling is that the strengths and weaknesses of each test are taken into account. Furthermore, the generated predictions are objective and convey the associated uncertainties. This approach was explored by the working group "Predictivity of In Vitro Genotoxicity Testing," convened in the context of the 8th International Workshop on Genotoxicity Testing (IWGT). Specifically, we applied mathematical modeling to a database with publicly available in vitro and in vivo data for genotoxicity. The results indicate that a mammalian in vitro clastogenicity test and a mammalian cell gene mutation test together provide strong predictive weight-of-evidence for evaluating genotoxic hazard of a substance, although they are better in predicting absence of genotoxic potential than in predicting presence of genotoxic potential. Remarkably, the bacterial reverse mutation (Ames) test did not significantly change these predictions when used in combination with in vitro mutagenicity and clastogenicity tests using cells of mammalian origin. However, in case only data from a bacterial reverse mutation test are available for the assessment of genotoxic potential, these do bear weight of evidence and thus can be used. Genotoxicity assays are generally executed in tiers, in which the bacterial reverse mutation test often is the starting point. Thus, it is reasonable to suspect that early in development test results from the bacterial reverse mutation test have influenced the composition of the database studied here. We performed several tests on the robustness of the database used for the analyses presented here, and the forthcoming results do not indicate a strong bias. Further research comparing in vitro genotoxicity data with in vivo data for additional compounds will provide more insights whether it is indeed time to reconsider the composition of the standard in vitro genotoxicity battery.

Indexed as

Models, TheoreticalMutagensAnimalsDNA DamageHumansMutagenicity TestsRisk AssessmentMutagensgenetic toxicitypredictionrisk assessmentuncertainty

Identifiers

PMID39628086
PMCPMC12988027

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.