Evidence map›Paper›PMID 39627874›Full record

ArticleEnvironmental microbiology2024

Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water.

Francisco Javier Giménez, Eveline Peeters, Miroslav Honty, Natalie Leys, Kristel Mijnendonckx

Abstract read
In one paragraph

Article in Environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Francisco Javier GiménezMicrobiology Unit, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.
Eveline PeetersResearch Group of Microbiology, Department of Bioengineering Sciences, Vrije Universiteit Brussel (VUB), Brussel, Belgium.ORCID https://orcid.org/0000-0001-7423-8714
Miroslav HontyR&D Disposal Unit, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.
Natalie LeysMicrobiology Unit, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.
Kristel MijnendonckxMicrobiology Unit, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.ORCID https://orcid.org/0000-0002-2801-1110

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Safe geological disposal of radioactive waste requires a thorough understanding of geochemical conditions in the host formation. Boom Clay is a potential candidate in Belgium, where active methanogenesis has been detected in its deep subsurface, influencing the local geochemistry. However, the pathways driving this process and the characteristics of the methanogenic archaea involved remain unclear. We isolated a distinct archaeal strain from Boom Clay pore water and characterized it geno- and phenotypically. Isolate TD41E1-1 belongs to a novel species of the Methanosarcina genus, for which the name Methanosarcina hadiensis sp. nov. is proposed. TD41E1-1 cells are coccus-shaped, irregularly sized cells enveloped by extracellular polymer substances. Growth and substrate utilization experiments and genomic analysis demonstrated that the strain prefers methylated compounds or hydrogen as substrates for methane production. Although it possesses a complete acetoclastic pathway, no growth was observed in the presence of acetate in the tested conditions. Based on its phylogenetic relation to other known Methanosarcina species and on the presence of c-type cytochromes, it can be concluded that the strain likely occupies an intermediate position between type I and type II Methanosarcina species. These findings provide valuable insights for assessing Boom Clay's suitability for geological disposal of radioactive waste.

Indexed as

ClayMethaneMethanosarcinaPhylogenyRNA, Ribosomal, 16SBelgiumDNA, ArchaealRadioactive WasteClayDNA, ArchaealMethaneRadioactive WasteRNA, Ribosomal, 16S

Identifiers

PMID39627874
PMCPMC11615132

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.