Evidence map›Paper›PMID 39627214›Full record

ArticleNature communications2024

ATAD5-BAZ1B interaction modulates PCNA ubiquitination during DNA repair.

Yeongjae Kim, Na Young Ha, Mi-Sun Kang, Eunjin Ryu, Geunil Yi, Juyeong Yoo, Nalae Kang, Byung-Gyu Kim, Kyungjae Myung, Sukhyun Kang

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Professor Emma Whitelaw, a pioneer of epigenetic inheritance.Frontiers in epigenetics and epigenomics · 2025
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yeongjae KimCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.ORCID 0000-0002-5676-294X
Na Young HaCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.
Mi-Sun KangCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.ORCID 0000-0003-3629-2589
Eunjin RyuCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.
Geunil YiCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.ORCID 0000-0003-1612-0464
Juyeong YooCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.
Nalae KangCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.
Byung-Gyu KimCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.ORCID 0000-0002-1152-4542
Kyungjae MyungCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea.ORCID 0000-0001-7975-6190
Sukhyun KangCenter for Genomic Integrity, Institute for Basic Science, Ulsan, 44919, Republic of Korea. kangsh@ibs.re.kr.ORCID 0000-0002-7567-0231

Funding

Institute for Basic Science (IBS) IBS-R022-D1
6 · The paper itself

Abstract

Mono-ubiquitinated PCNA (mono-Ub-PCNA) is generated when replication forks encounter obstacles, enabling the bypass of DNA lesions. After resolving stalled forks, Ub-PCNA must be de-ubiquitinated to resume high-fidelity DNA synthesis. ATAD5, in cooperation with the UAF1-USP1 complex, is responsible for this de-ubiquitination. However, the precise regulation of timely Ub-PCNA de-ubiquitination remains unclear. Our research reveals that BAZ1B, a regulatory subunit of the BAZ1B-SMARCA5 chromatin-remodeling complex (also known as the WICH complex), plays a crucial role in fine-tuning the de-ubiquitination process of Ub-PCNA. The BAZ1B binding region of ATAD5 encompasses the UAF1-binding domain of ATAD5. Disruption of the ATAD5-BAZ1B interaction results in premature de-ubiquitination of Ub-PCNA following treatment with hydrogen peroxide. Cells with impaired BAZ1B binding to ATAD5 display increased sensitivity to oxidative stress compared to wild-type cells. These findings suggest that BAZ1B prevents premature Ub-PCNA de-ubiquitination, thereby safeguarding genome integrity.

Indexed as

ATPases Associated with Diverse Cellular ActivitiesDNA-Binding ProteinsDNA RepairProliferating Cell Nuclear AntigenUbiquitinationAdenosine TriphosphatasesChromosomal Proteins, Non-HistoneDNA DamageHEK293 CellsHumansHydrogen PeroxideNuclear ProteinsOxidative StressProtein BindingAdenosine TriphosphatasesATAD5 protein, humanATPases Associated with Diverse Cellular ActivitiesChromosomal Proteins, Non-HistoneDNA-Binding ProteinsHydrogen PeroxideNuclear ProteinsPCNA protein, humanProliferating Cell Nuclear AntigenSMARCA5 protein, human

Identifiers

PMID39627214
PMCPMC11615311

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.