Evidence map›Paper›PMID 39626678›Full record

ArticleCell host & microbe2024

Cas10 relieves host growth arrest to facilitate spacer retention during type III-A CRISPR-Cas immunity.

Naama Aviram, Amanda K Shilton, Nia G Lyn, Bernardo S Reis, Amir Brivanlou, Luciano A Marraffini

Abstract read
In one paragraph

Article in Cell host & microbe, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. How bacterial immune systems sense phage infection.Nature reviews. Microbiology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Cat1 forms filament networks to degrade NADScience (New York, N.Y.) · 2025
    Article
  10. Characterization of Five CRISPR Systems inInternational journal of molecular sciences · 2025
    Article
  11. Review
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Naama AviramLaboratory of Bacteriology, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA. Electronic address: naviram@rockefeller.edu.
Amanda K ShiltonLaboratory of Bacteriology, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA.
Nia G LynLaboratory of Bacteriology, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA.
Bernardo S ReisLaboratory of Mucosal Immunology, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA.
Amir BrivanlouLaboratory of Bacteriology, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA.
Luciano A MarraffiniLaboratory of Bacteriology, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA; Howard Hughes Medical Institute, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA. Electronic address: marraffini@rockefeller.edu.

Funding

Spacer acquisition during the type III-A CRISPR-Cas immune responseR01GM149834 · NIGMS · ROCKEFELLER UNIVERSITY · PI Luciano A Marraffini · 2023 to 2026
$1.7M
Molecular mechanisms of memory formation and tolerance in CRISPR-Cas systemsR00GM148720 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Naama Aviram · 2025 to 2026
$498k
Molecular mechanisms of memory formation and tolerance in CRISPR-Cas systemsK99GM148720 · NIGMS · ROCKEFELLER UNIVERSITY · PI AVIRAM, NAAMA · 2023 to 2024
$250k
Howard Hughes Medical InstituteNIGMS NIH HHS K99 GM148720NIGMS NIH HHS R00 GM148720NIGMS NIH HHS R01 GM149834
6 · The paper itself

Abstract

Cells from all kingdoms of life can enter growth arrest in unfavorable environmental conditions. Key to this process are mechanisms enabling recovery from this state. Staphylococcal type III-A CRISPR-Cas loci encode the Cas10 complex that uses a guide RNA to locate complementary viral transcripts and start an immune response. When the target sequence is expressed late in the viral lytic cycle, defense requires the activity of Csm6, a non-specific RNase that inhibits the growth of the infected cell. How Csm6 protects from infection and whether growth can be restored is not known. Here, we show that growth arrest provides immunity at the population level, preventing viral replication and allowing uninfected cells to propagate. In addition, the ssDNase activity of Cas10 is required for the regrowth of a subset of the arrested cells and the recovery of the infected host, presumably ending the immune response through degradation of the viral DNA.

Indexed as

CRISPR-Cas SystemsVirus ReplicationBacterial ProteinsCRISPR-Associated ProteinsDNA, ViralStaphylococcus aureusBacterial ProteinsCRISPR-Associated ProteinsDNA, Viraladaptive immunitybacteriophageCRISPRstaphylococci

Identifiers

PMID39626678
PMCPMC11708336

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.