Evidence map›Paper›PMID 39625470›Full record

ArticleeLife2024

TPR is required for cytoplasmic chromatin fragment formation during senescence.

Bethany M Bartlett, Yatendra Kumar, Shelagh Boyle, Tamoghna Chowdhury, Andrea Quintanilla, Charlene Boumendil, Juan Carlos Acosta, Wendy A Bickmore

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Bethany M BartlettMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.ORCID https://orcid.org/0000-0003-1999-7675
Yatendra KumarMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.
Shelagh BoyleMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.
Tamoghna ChowdhuryCentre for Regenerative Medicine, Institute for Regeneration and Repair, University of Edinburgh, Edinburgh, United Kingdom.ORCID https://orcid.org/0009-0004-6287-7227
Andrea QuintanillaInstitute of Biomedicine and Biotechnology of Cantabria (CSIC-Universidad de Cantabria), Santander, Spain.
Charlene BoumendilInstitute of Human Genetics, UMR9002, CNRS - Université de Montpellier, Montpellier, France.ORCID https://orcid.org/0000-0002-1953-3902
Juan Carlos AcostaInstitute of Biomedicine and Biotechnology of Cantabria (CSIC-Universidad de Cantabria), Santander, Spain.ORCID https://orcid.org/0000-0002-7989-7329
Wendy A BickmoreMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, United Kingdom.ORCID https://orcid.org/0000-0001-6660-7735

Funding

Agence Nationale de la Recherche ANR-21-CE12-0039Cancer Research UK C47559/A16243Medical Research Council MC_UU_00007/2Medical Research Council MC_UU_00035/7Ministry of Science and Innovation, Government of Spain Proyecto PID2020-117860GB-I00Wellcome TrustWellcome Trust 10.35802/217120Wellcome Trust 217120/Z/19/Z
6 · The paper itself

Abstract

During oncogene-induced senescence there are striking changes in the organisation of heterochromatin in the nucleus. This is accompanied by activation of a pro-inflammatory gene expression programme - the senescence-associated secretory phenotype (SASP) - driven by transcription factors such as NF-κB. The relationship between heterochromatin re-organisation and the SASP has been unclear. Here, we show that TPR, a protein of the nuclear pore complex basket required for heterochromatin re-organisation during senescence, is also required for the very early activation of NF-κB signalling during the stress-response phase of oncogene-induced senescence. This is prior to activation of the SASP and occurs without affecting NF-κB nuclear import. We show that TPR is required for the activation of innate immune signalling at these early stages of senescence and we link this to the formation of heterochromatin-enriched cytoplasmic chromatin fragments thought to bleb off from the nuclear periphery. We show that HMGA1 is also required for cytoplasmic chromatin fragment formation. Together these data suggest that re-organisation of heterochromatin is involved in altered structural integrity of the nuclear periphery during senescence, and that this can lead to activation of cytoplasmic nucleic acid sensing, NF-κB signalling, and activation of the SASP.

Indexed as

Cellular SenescenceNF-kappa BChromatinCytoplasmHeterochromatinHumansNuclear Pore Complex ProteinsSignal TransductionChromatinHeterochromatinNF-kappa BNuclear Pore Complex Proteinscell biologychromosomesgene expressiongenome integrityheterochromatinhumaninflammationnuclear peripheryoncogenesenescence

Identifiers

PMID39625470
PMCPMC11666244

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.