Evidence map›Paper›PMID 39625448›Full record

ArticleJournal of the American Chemical Society2024

Joining Natural and Synthetic DNA Using Biversal Nucleotides: Efficient Sequencing of Six-Nucleotide DNA.

Bang Wang, Hyo-Joong Kim, Kevin M Bradley, Cen Chen, Chris McLendon, Zunyi Yang, Steven A Benner

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bang WangFoundation for Applied Molecular Evolution, 13709 Progress Blvd, Alachua, Florida 32601, United States.
Hyo-Joong KimFoundation for Applied Molecular Evolution, 13709 Progress Blvd, Alachua, Florida 32601, United States.
Kevin M BradleyFirebird Biomolecular Sciences, LLC, Alachua, Florida 32601, United States.
Cen ChenFoundation for Applied Molecular Evolution, 13709 Progress Blvd, Alachua, Florida 32601, United States.
Chris McLendonFirebird Biomolecular Sciences, LLC, Alachua, Florida 32601, United States.
Zunyi YangFoundation for Applied Molecular Evolution, 13709 Progress Blvd, Alachua, Florida 32601, United States.
Steven A BennerFoundation for Applied Molecular Evolution, 13709 Progress Blvd, Alachua, Florida 32601, United States.ORCID 0000-0002-3318-9917

Funding

Equipment Supplement to 1R01GM141391-01A1 (Easily Used Kits to Evolve Reagents that Covalently Tag and Inactivate Proteins)R01GM141391 · NIGMS · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI BENNER, STEVEN A · 2021 to 2024
$1.4M
NIGMS NIH HHS R01 GM141391
6 · The paper itself

Abstract

By rearranging hydrogen bond donor and acceptor groups within a standard Watson-Crick geometry, DNA can add eight independently replicable nucleotides forming four additional not found in standard Terran DNA. For many applications, the orthogonal pairing of standard and nonstandard pairs offers a key advantage. However, other applications require standard and nonstandard nucleotides to communicate with each other. This is especially true when seeking to recruit high-throughput instruments (e.g., Illumina), designed to sequence standard 4-nucleotide DNA, to sequence DNA that includes added nucleotides. For this purpose, PCR workflows are needed to replace nonstandard nucleotides in (for example) a 6-letter DNA sequence by defined mixtures of standard nucleotides built from 4 nucleotides. High-throughput sequencing can then report the sequences of those mixtures to bioinformatic alignment tools, which infer the original 6-nucleotide sequence by analysis of the mixtures. Unfortunately, the intrinsic orthogonality of standard and nonstandard nucleotides often demand polymerases that violate pairing biophysics to do this replacement, leading to inefficiencies in this "transliteration" process. Thus, laboratory

Indexed as

DNANucleotidesHigh-Throughput Nucleotide SequencingSequence Analysis, DNADNANucleotides

Identifiers

PMID39625448
PMCPMC12679606

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.