Evidence map›Paper›PMID 39624206›Full record

ArticleBeilstein journal of nanotechnology2024

The round-robin approach applied to nanoinformatics: consensus prediction of nanomaterials zeta potential.

Dimitra-Danai Varsou, Arkaprava Banerjee, Joyita Roy, Kunal Roy, Giannis Savvas, Haralambos Sarimveis, Ewelina Wyrzykowska, Mateusz Balicki, Tomasz Puzyn, Georgia Melagraki and 2 more

Abstract read
In one paragraph

Article in Beilstein journal of nanotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Nanoinformatics: spanning scales, systems and solutions.Beilstein journal of nanotechnology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Dimitra-Danai VarsouNovaMechanics MIKE, Piraeus 18545, Greece.ORCID https://orcid.org/0000-0002-7474-7014
Arkaprava BanerjeeDrug Theoretics and Cheminformatics (DTC) Lab, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700 032, India.ORCID https://orcid.org/0000-0001-8468-0784
Joyita RoyDrug Theoretics and Cheminformatics (DTC) Lab, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700 032, India.ORCID https://orcid.org/0000-0001-5000-7073
Kunal RoyDrug Theoretics and Cheminformatics (DTC) Lab, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700 032, India.ORCID https://orcid.org/0000-0003-4486-8074
Giannis SavvasSchool of Chemical Engineering, National Technical University of Athens, 9 Iroon Polytechniou, 15780, Athens, Greece.ORCID https://orcid.org/0009-0003-6054-0666
Haralambos SarimveisSchool of Chemical Engineering, National Technical University of Athens, 9 Iroon Polytechniou, 15780, Athens, Greece.
Ewelina WyrzykowskaQSAR Lab, Trzy Lipy 3, 80-172 Gdańsk, Poland.
Mateusz BalickiQSAR Lab, Trzy Lipy 3, 80-172 Gdańsk, Poland.ORCID https://orcid.org/0000-0002-4218-3250
Tomasz PuzynQSAR Lab, Trzy Lipy 3, 80-172 Gdańsk, Poland.ORCID https://orcid.org/0000-0003-0449-8339
Georgia MelagrakiDivision of Physical Sciences and Applications, Hellenic Military Academy, Vari 16672, Greece.
Iseult LynchSchool of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, B15 2TT Birmingham, United Kingdom.ORCID https://orcid.org/0000-0003-4250-4584
Antreas AfantitisEntelos Institute, Larnaca 6059, Cyprus.ORCID https://orcid.org/0000-0002-0977-8180

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A key step in building regulatory acceptance of alternative or non-animal test methods has long been the use of interlaboratory comparisons or round-robins (RRs), in which a common test material and standard operating procedure is provided to all participants, who measure the specific endpoint and return their data for statistical comparison to demonstrate the reproducibility of the method. While there is currently no standard approach for the comparison of modelling approaches, consensus modelling is emerging as a "modelling equivalent" of a RR. We demonstrate here a novel approach to evaluate the performance of different models for the same endpoint (nanomaterials' zeta potential) trained using a common dataset, through generation of a consensus model, leading to increased confidence in the model predictions and underlying models. Using a publicly available dataset, four research groups (NovaMechanics Ltd. (NovaM)-Cyprus, National Technical University of Athens (NTUA)-Greece, QSAR Lab Ltd.-Poland, and DTC Lab-India) built five distinct machine learning (ML) models for the in silico prediction of the zeta potential of metal and metal oxide-nanomaterials (NMs) in aqueous media. The individual models were integrated into a consensus modelling scheme, enhancing their predictive accuracy and reducing their biases. The consensus models outperform the individual models, resulting in more reliable predictions. We propose this approach as a valuable method for increasing the validity of nanoinformatics models and driving regulatory acceptance of in silico new approach methodologies for the use within an "Integrated Approach to Testing and Assessment" (IATA) for risk assessment of NMs.

Indexed as

consensus modellingQSPRread-acrossround-robin testzeta potential

Identifiers

PMID39624206
PMCPMC11610486

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.