Evidence map›Paper›PMID 39624139›Full record

ArticleMethodsX2024

Validation of reference genes for cardiac RT-qPCR studies spanning the fetal to adult period.

Karthikeyan Bose, Samantha Louey, Sonnet S Jonker

Abstract read
In one paragraph

Article in MethodsX, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Karthikeyan BoseCenter for Developmental Health, Knight Cardiovascular Institute, Oregon Health & Science University, 3303 S Bond Ave, Portland, OR, USA.
Samantha LoueyCenter for Developmental Health, Knight Cardiovascular Institute, Oregon Health & Science University, 3303 S Bond Ave, Portland, OR, USA.
Sonnet S JonkerCenter for Developmental Health, Knight Cardiovascular Institute, Oregon Health & Science University, 3303 S Bond Ave, Portland, OR, USA.

Funding

Perinatal cardiomyocyte pruning driven by metabolic maturation: Opportunity for interventionR01HL142483 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI JONKER, SONNET SKY · 2019 to 2022
$2.7M
Role of Birth on Microvasculature Development in Striated MuscleRole of Birth on Microvasculature Development in Striated MuscleR21HL152112 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI JONKER, SONNET SKY · 2021 to 2022
$438k
NHLBI NIH HHS R01 HL142483NHLBI NIH HHS R21 HL152112
6 · The paper itself

Abstract

Many genes used as internal controls for mRNA expression studies are unstable (change) over development. This study determined an approach to validate reference genes for mRNA studies spanning the fetal period to adulthood in sheep hearts.•We determined the mRNA expression of 12 candidate reference genes (ACTB, GAPDH, H3-3A, HYAL2, PPIA, RNA18S1, RPL32, RPL37A, RPL41, RPLP0, RPS15, and YWHAZ) via RT-qPCR. Per RefFinder, which incorporates computational algorithms by BestKeeper, comparative delta Ct, GeNorm, and NormFinder, RPL32, RPL37A, HYAL2, ACTB and GAPDH were the most stable reference genes, although none were unchanged across all ages.•Systematical calculation of the geometric means of 3 reference genes revealed the combination of HYAL2, RPL32, and RPL37A was unchanged across the 5 fetal, neonatal, and adult ages.•We determined the most stable combination of reference genes for cardiac gene expression studies in sheep from fetus to newborn to adult; these steps are applicable to determine internal controls for mRNA studies in other organs, other species, and periods in which reference gene instability is high.

Indexed as

Gene expressionHousekeepingMyocardiumRT-PCRSheepValidation of reference genes for RT-qPCR

Identifiers

PMID39624139
PMCPMC11609234

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.