Evidence map›Paper›PMID 39623727›Full record

ArticleBiotechnology journal2024

Characterization of the Ubiquitin-Modified Proteome of Recombinant Chinese Hamster Ovary Cells in Response to Endoplasmic Reticulum Stress.

Karuppuchamy Selvaprakash, Christiana-Kondylo Sideri, Michael Henry, Esen Efeoglu, David Ryan, Paula Meleady

Abstract read
In one paragraph

Article in Biotechnology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Karuppuchamy SelvaprakashLife Sciences Institute, Dublin City University, Dublin, Ireland.
Christiana-Kondylo SideriLife Sciences Institute, Dublin City University, Dublin, Ireland.
Michael HenryLife Sciences Institute, Dublin City University, Dublin, Ireland.
Esen EfeogluLife Sciences Institute, Dublin City University, Dublin, Ireland.
David RyanLife Sciences Institute, Dublin City University, Dublin, Ireland.
Paula MeleadyLife Sciences Institute, Dublin City University, Dublin, Ireland.ORCID https://orcid.org/0000-0001-5306-310X

Funding

Science Foundation Ireland Frontiers for the Future Award 19/FFP/6759Science Foundation Ireland Infrastructure Award to Dublin City University SFI 16/RI/3701
6 · The paper itself

Abstract

Chinese hamster ovary (CHO) cells remain the most widely used host cell line for biotherapeutics production. Despite their widespread use, understanding endoplasmic reticulum (ER) stress conditions in recombinant protein production remains limited, often creating bottlenecks preventing improved production titers and product quality. Ubiquitination not only targets substrates (e.g., misfolded proteins) for proteasome degradation but also has important regulatory control functions including cell cycle regulation, translation, apoptosis, autophagy, etc. and hence is likely to be central to understanding and controlling the productivity of recombinant biotherapeutics. This study aimed to uncover differentially expressed ubiquitinated proteins following artificial induction of ER-stress in recombinant CHO cells. CHO cells were treated with the stress inducer tunicamycin and the proteasome inhibitor MG132, followed by LC-MS/MS proteomic analysis. We identified >4000 ubiquitinated peptides from CHO-DP12 cells under ER stress conditions and proteasome inhibition. Moreover, data analysis showed altered abundance levels of >900 ubiquitinated proteins under the combination of ER stress and proteasome inhibition compared to untreated controls. Gene Ontology (GO) analysis of these ubiquitinated proteins resulted in a significant enrichment of key pathways involving the proteasome, protein processing in the ER, N-glycan biosynthesis, and ubiquitin-mediated proteolysis. ER stress response proteins such as GRP78, HSP90B1, ATF6, HERPUD1, and PDIA4 were found to be highly ubiquitinated and exhibited a significant increase in abundance following induction of ER-stress conditions. This study broadens our comprehension of the roles played by protein ubiquitination in CHO cell stress responses, potentially revealing targets for tailored cell line engineering aimed at enhancing stress tolerance and production efficiency.

Indexed as

CHO CellsEndoplasmic Reticulum StressProteomeRecombinant ProteinsUbiquitinationAnimalsCell EngineeringCricetulusCysteine Proteinase InhibitorsLeupeptinsLiquid Chromatography-Mass SpectrometryProteasome Endopeptidase ComplexProteolysisProteomicsTandem Mass SpectrometryTunicamycinbenzyloxycarbonylleucyl-leucyl-leucine aldehydeCysteine Proteinase InhibitorsLeupeptinsProteasome Endopeptidase ComplexProteomeRecombinant ProteinsTunicamycinUbiquitinUbiquitinated ProteinsChinese hamster ovary (CHO) cellsendoplasmic reticulum stressK‐ε‐GG peptidesLC‐MS/MS analysisproteasome inhibitionubiquitination

Identifiers

PMID39623727
PMCPMC11612545

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.